Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3427

Experiment: Succinic Acid; Light intensity 75 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 75 uM
3,943,831	-		Rru_A3426	0.47	+0.1
3,943,831	-		Rru_A3426	0.47	-0.1
3,943,831	-		Rru_A3426	0.47	+0.5
3,943,915	+		Rru_A3426	0.54	-0.5
3,943,916	-		Rru_A3426	0.54	-0.3
3,943,916	-		Rru_A3426	0.54	+0.1
3,944,022	+		Rru_A3426	0.62	-0.7
3,944,046	+		Rru_A3426	0.64	-0.3
3,944,047	-		Rru_A3426	0.64	-0.7
3,944,047	-		Rru_A3426	0.64	-0.9
3,944,109	-		Rru_A3426	0.69	-0.4
3,944,349	+		Rru_A3426	0.87	+0.1
3,944,349	+		Rru_A3426	0.87	+0.1
3,944,349	+		Rru_A3426	0.87	+0.1
3,944,350	-		Rru_A3426	0.87	-0.9
3,944,350	-		Rru_A3426	0.87	-0.9
3,944,352	+		Rru_A3426	0.87	+0.0
3,944,352	+		Rru_A3426	0.87	+0.3
3,944,353	-		Rru_A3426	0.88	+1.1
3,944,353	-		Rru_A3426	0.88	+0.1
3,944,353	-		Rru_A3426	0.88	+0.1
3,944,373	+		Rru_A3426	0.89	+0.1
3,944,373	+		Rru_A3426	0.89	-0.5
3,944,373	+		Rru_A3426	0.89	+0.2
3,944,373	+		Rru_A3426	0.89	+0.6
3,944,374	-		Rru_A3426	0.89	+0.2
3,944,374	-		Rru_A3426	0.89	-0.9
3,944,374	-		Rru_A3426	0.89	-0.1
3,944,374	-		Rru_A3426	0.89	-0.7
3,944,375	+		Rru_A3426	0.89	-0.1
3,944,375	+		Rru_A3426	0.89	-1.3
3,944,375	+		Rru_A3426	0.89	+0.1
3,944,376	-		Rru_A3426	0.89	+0.1
3,944,376	-		Rru_A3426	0.89	-0.6
3,944,376	-		Rru_A3426	0.89	-1.5
3,944,376	-		Rru_A3426	0.89	+0.0
3,944,512	-				+1.0
3,944,512	-				+2.2
3,944,534	+				+1.3
3,944,534	+				+0.6
3,944,535	-				+0.1
3,944,575	+				+0.1
3,944,576	-				+1.1
3,944,576	-				+1.7
3,944,616	+				+0.1
3,944,656	+				+1.0
3,944,656	+				+0.1
3,944,658	+				+1.5
3,944,709	+				+0.2
3,944,760	+				+0.1
3,944,760	+				-2.0
3,944,760	+				-1.9
3,944,760	+				+0.2
3,944,761	-				-2.5
3,944,761	-				-2.0
3,944,761	-				-2.5
3,944,761	-				-2.6
3,944,857	-		Rru_A3427	0.14	-1.6
3,944,868	+		Rru_A3427	0.15	+0.1
3,944,869	-		Rru_A3427	0.15	-1.9
3,944,869	-		Rru_A3427	0.15	-1.6
3,944,869	-		Rru_A3427	0.15	-2.9
3,944,869	-		Rru_A3427	0.15	-1.9
3,944,869	-		Rru_A3427	0.15	-1.6
3,944,869	-		Rru_A3427	0.15	+0.1
3,944,869	-		Rru_A3427	0.15	-2.4
3,944,869	-		Rru_A3427	0.15	-1.3
3,944,869	-		Rru_A3427	0.15	-1.0
3,944,869	-		Rru_A3427	0.15	-1.5
3,944,869	-		Rru_A3427	0.15	-1.7
3,944,869	-		Rru_A3427	0.15	-1.8
3,944,869	-		Rru_A3427	0.15	-1.7
3,944,893	-		Rru_A3427	0.17	-1.9
3,944,893	-		Rru_A3427	0.17	-1.4
3,944,893	-		Rru_A3427	0.17	-0.9
3,944,938	-		Rru_A3427	0.20	-1.8
3,944,938	-		Rru_A3427	0.20	+0.1
3,944,964	-		Rru_A3427	0.22	-1.6
3,944,964	-		Rru_A3427	0.22	-1.7
3,944,976	-		Rru_A3427	0.23	-1.0
3,945,114	+		Rru_A3427	0.35	-1.8
3,945,114	+		Rru_A3427	0.35	+0.1
3,945,114	+		Rru_A3427	0.35	+0.1
3,945,115	-		Rru_A3427	0.35	+0.1
3,945,115	-		Rru_A3427	0.35	+0.1
3,945,270	+		Rru_A3427	0.47	-3.2
3,945,270	+		Rru_A3427	0.47	-1.3
3,945,271	-		Rru_A3427	0.48	-3.1
3,945,271	-		Rru_A3427	0.48	-1.9
3,945,271	-		Rru_A3427	0.48	-1.7
3,945,271	-		Rru_A3427	0.48	+0.1
3,945,271	-		Rru_A3427	0.48	-0.7
3,945,271	-		Rru_A3427	0.48	-1.7
3,945,271	-		Rru_A3427	0.48	-3.0
3,945,271	-		Rru_A3427	0.48	-1.3
3,945,273	+		Rru_A3427	0.48	+0.1
3,945,273	+		Rru_A3427	0.48	-0.3
3,945,273	+		Rru_A3427	0.48	-1.2
3,945,273	+		Rru_A3427	0.48	+0.1
3,945,273	+		Rru_A3427	0.48	-1.1
3,945,273	+		Rru_A3427	0.48	+0.1
3,945,274	-		Rru_A3427	0.48	-1.9
3,945,274	-		Rru_A3427	0.48	-0.9
3,945,567	+		Rru_A3427	0.72	-0.4
3,945,567	+		Rru_A3427	0.72	-0.7
3,945,567	+		Rru_A3427	0.72	-0.7
3,945,567	+		Rru_A3427	0.72	+1.1
3,945,568	-		Rru_A3427	0.72	+1.1
3,945,568	-		Rru_A3427	0.72	-4.0
3,945,568	-		Rru_A3427	0.72	-1.5
3,945,568	-		Rru_A3427	0.72	-1.5
3,945,568	-		Rru_A3427	0.72	-1.6
3,945,568	-		Rru_A3427	0.72	-1.5
3,945,568	-		Rru_A3427	0.72	-2.4
3,945,568	-		Rru_A3427	0.72	-4.3
3,945,631	-		Rru_A3427	0.77	-2.4
3,945,684	+		Rru_A3427	0.81	+0.1
3,945,684	+		Rru_A3427	0.81	-0.4
3,945,684	+		Rru_A3427	0.81	+1.4
3,945,684	+		Rru_A3427	0.81	-1.9
3,945,684	+		Rru_A3427	0.81	+0.5
3,945,684	+		Rru_A3427	0.81	+0.1
3,945,685	-		Rru_A3427	0.81	-2.6
3,945,685	-		Rru_A3427	0.81	-1.7
3,945,685	-		Rru_A3427	0.81	-2.6
3,945,685	-		Rru_A3427	0.81	-1.8
3,945,685	-		Rru_A3427	0.81	-2.1
3,945,685	-		Rru_A3427	0.81	-2.1
3,945,685	-		Rru_A3427	0.81	-1.2
3,945,685	-		Rru_A3427	0.81	-0.3
3,945,995	+		Rru_A3428	0.10	-1.8
3,945,995	+		Rru_A3428	0.10	+0.1
3,945,996	-		Rru_A3428	0.10	-2.6
3,945,996	-		Rru_A3428	0.10	-2.0
3,945,996	-		Rru_A3428	0.10	-1.7
3,945,996	-		Rru_A3428	0.10	-2.0
3,945,996	-		Rru_A3428	0.10	-0.6
3,945,996	-		Rru_A3428	0.10	-2.2
3,946,070	-		Rru_A3428	0.19	-0.7
3,946,070	-		Rru_A3428	0.19	-2.2
3,946,238	+		Rru_A3428	0.40	-1.4
3,946,238	+		Rru_A3428	0.40	-2.1
3,946,238	+		Rru_A3428	0.40	-1.5
3,946,239	-		Rru_A3428	0.40	-2.4
3,946,239	-		Rru_A3428	0.40	-1.6
3,946,239	-		Rru_A3428	0.40	-0.9
3,946,239	-		Rru_A3428	0.40	-3.0
3,946,239	-		Rru_A3428	0.40	-1.9
3,946,254	-		Rru_A3428	0.42	+0.1
3,946,254	-		Rru_A3428	0.42	-1.3
3,946,254	-		Rru_A3428	0.42	-1.5
3,946,350	+		Rru_A3428	0.54	-1.9
3,946,350	+		Rru_A3428	0.54	+0.1
3,946,350	+		Rru_A3428	0.54	-1.9
3,946,351	-		Rru_A3428	0.54	-1.1
3,946,454	+		Rru_A3428	0.67	+0.1
3,946,454	+		Rru_A3428	0.67	-1.8
3,946,455	-		Rru_A3428	0.67	-1.4
3,946,455	-		Rru_A3428	0.67	-1.6
3,946,457	+		Rru_A3428	0.67	-1.8
3,946,457	+		Rru_A3428	0.67	+1.0
3,946,458	-		Rru_A3428	0.67	+0.1
3,946,572	+		Rru_A3428	0.81	-2.4
3,946,724	+				+0.1
3,946,724	+				+0.9
3,946,725	-				+0.9
3,946,797	-				+1.7
3,946,797	-				+0.1
3,946,837	-				+0.6
3,946,847	+				+0.1
3,946,900	+				+0.1
3,946,901	-				+0.1
3,946,901	-				+0.2
3,946,901	-				+0.1
3,946,901	-				+0.1
3,946,905	+				+0.4
3,946,906	-				-1.5
3,946,906	-				+0.1