Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3399

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3397 and Rru_A3398 are separated by 98 nucleotidesRru_A3398 and Rru_A3399 are separated by 244 nucleotidesRru_A3399 and Rru_A3400 are separated by 222 nucleotides Rru_A3397: Rru_A3397 - hypothetical protein (NCBI), at 3,914,148 to 3,914,399 _A3397 Rru_A3398: Rru_A3398 - Transcriptional Regulator, XRE family (NCBI), at 3,914,498 to 3,915,040 _A3398 Rru_A3399: Rru_A3399 - Transcriptional Regulator, BadM/Rrf2 family (NCBI), at 3,915,285 to 3,915,767 _A3399 Rru_A3400: Rru_A3400 - Thiosulphate-binding protein (NCBI), at 3,915,990 to 3,917,054 _A3400 Position (kb) 3915 3916Strain fitness (log2 ratio) -1 0 1at 3914.580 kb on + strand, within Rru_A3398at 3914.581 kb on - strand, within Rru_A3398at 3914.945 kb on - strand, within Rru_A3398at 3915.057 kb on - strandat 3915.121 kb on + strandat 3915.249 kb on - strandat 3915.258 kb on - strandat 3915.289 kb on + strandat 3915.290 kb on - strandat 3915.306 kb on + strandat 3915.386 kb on + strand, within Rru_A3399at 3915.386 kb on + strand, within Rru_A3399at 3915.387 kb on - strand, within Rru_A3399at 3915.472 kb on - strand, within Rru_A3399at 3915.498 kb on - strand, within Rru_A3399at 3915.498 kb on - strand, within Rru_A3399at 3915.636 kb on + strand, within Rru_A3399at 3915.798 kb on - strandat 3915.910 kb on + strandat 3915.910 kb on + strandat 3915.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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3,914,580 + Rru_A3398 0.15 +0.1
3,914,581 - Rru_A3398 0.15 +0.5
3,914,945 - Rru_A3398 0.82 +0.8
3,915,057 - +0.4
3,915,121 + +1.0
3,915,249 - +0.1
3,915,258 - -0.0
3,915,289 + +0.1
3,915,290 - -1.2
3,915,306 + -1.5
3,915,386 + Rru_A3399 0.21 +0.1
3,915,386 + Rru_A3399 0.21 +0.1
3,915,387 - Rru_A3399 0.21 -0.2
3,915,472 - Rru_A3399 0.39 -0.3
3,915,498 - Rru_A3399 0.44 -0.8
3,915,498 - Rru_A3399 0.44 +0.1
3,915,636 + Rru_A3399 0.73 +0.1
3,915,798 - +0.1
3,915,910 + +0.1
3,915,910 + -0.2
3,915,911 - +0.1

Or see this region's nucleotide sequence