Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3267

Experiment: Succinic Acid; Light intensity 75 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3266 and Rru_A3267 overlap by 4 nucleotidesRru_A3267 and Rru_A3268 overlap by 4 nucleotidesRru_A3268 and Rru_A3269 overlap by 23 nucleotides Rru_A3266: Rru_A3266 - Homoserine O-acetyltransferase (NCBI), at 3,765,238 to 3,766,413 _A3266 Rru_A3267: Rru_A3267 - Methionine biosynthesis MetW (NCBI), at 3,766,410 to 3,767,045 _A3267 Rru_A3268: Rru_A3268 - hypothetical protein (NCBI), at 3,767,042 to 3,767,668 _A3268 Rru_A3269: Rru_A3269 - hypothetical protein (NCBI), at 3,767,646 to 3,768,440 _A3269 Position (kb) 3766 3767 3768Strain fitness (log2 ratio) -3 -2 -1 0 1at 3765.512 kb on - strand, within Rru_A3266at 3765.512 kb on - strand, within Rru_A3266at 3765.512 kb on - strand, within Rru_A3266at 3765.512 kb on - strand, within Rru_A3266at 3765.739 kb on + strand, within Rru_A3266at 3765.924 kb on + strand, within Rru_A3266at 3765.924 kb on + strand, within Rru_A3266at 3765.924 kb on + strand, within Rru_A3266at 3765.931 kb on + strand, within Rru_A3266at 3765.931 kb on + strand, within Rru_A3266at 3765.931 kb on + strand, within Rru_A3266at 3765.931 kb on + strand, within Rru_A3266at 3765.931 kb on + strand, within Rru_A3266at 3765.932 kb on - strand, within Rru_A3266at 3765.932 kb on - strand, within Rru_A3266at 3765.932 kb on - strand, within Rru_A3266at 3765.932 kb on - strand, within Rru_A3266at 3765.932 kb on - strand, within Rru_A3266at 3765.997 kb on + strand, within Rru_A3266at 3765.998 kb on - strand, within Rru_A3266at 3765.998 kb on - strand, within Rru_A3266at 3765.998 kb on - strand, within Rru_A3266at 3765.998 kb on - strand, within Rru_A3266at 3766.081 kb on + strand, within Rru_A3266at 3766.081 kb on + strand, within Rru_A3266at 3766.081 kb on + strand, within Rru_A3266at 3766.081 kb on + strand, within Rru_A3266at 3766.081 kb on + strand, within Rru_A3266at 3766.087 kb on + strand, within Rru_A3266at 3766.087 kb on + strand, within Rru_A3266at 3766.087 kb on + strand, within Rru_A3266at 3766.088 kb on - strand, within Rru_A3266at 3766.443 kb on + strandat 3766.527 kb on + strand, within Rru_A3267at 3766.527 kb on + strand, within Rru_A3267at 3766.527 kb on + strand, within Rru_A3267at 3766.527 kb on + strand, within Rru_A3267at 3766.528 kb on - strand, within Rru_A3267at 3766.528 kb on - strand, within Rru_A3267at 3766.528 kb on - strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.833 kb on + strand, within Rru_A3267at 3766.842 kb on + strand, within Rru_A3267at 3766.843 kb on - strand, within Rru_A3267at 3767.366 kb on + strand, within Rru_A3268at 3767.406 kb on - strand, within Rru_A3268at 3767.737 kb on + strand, within Rru_A3269at 3767.737 kb on + strand, within Rru_A3269at 3767.737 kb on + strand, within Rru_A3269at 3767.738 kb on - strand, within Rru_A3269at 3767.763 kb on - strand, within Rru_A3269

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
remove
3,765,512 - Rru_A3266 0.23 -3.7
3,765,512 - Rru_A3266 0.23 +0.1
3,765,512 - Rru_A3266 0.23 +0.1
3,765,512 - Rru_A3266 0.23 +0.1
3,765,739 + Rru_A3266 0.43 +0.1
3,765,924 + Rru_A3266 0.58 +0.1
3,765,924 + Rru_A3266 0.58 +0.1
3,765,924 + Rru_A3266 0.58 -1.5
3,765,931 + Rru_A3266 0.59 -3.4
3,765,931 + Rru_A3266 0.59 -0.6
3,765,931 + Rru_A3266 0.59 -1.3
3,765,931 + Rru_A3266 0.59 -1.9
3,765,931 + Rru_A3266 0.59 -2.7
3,765,932 - Rru_A3266 0.59 -2.0
3,765,932 - Rru_A3266 0.59 +1.7
3,765,932 - Rru_A3266 0.59 +0.1
3,765,932 - Rru_A3266 0.59 -0.3
3,765,932 - Rru_A3266 0.59 +0.1
3,765,997 + Rru_A3266 0.65 -1.2
3,765,998 - Rru_A3266 0.65 +0.1
3,765,998 - Rru_A3266 0.65 +0.1
3,765,998 - Rru_A3266 0.65 +0.1
3,765,998 - Rru_A3266 0.65 +0.1
3,766,081 + Rru_A3266 0.72 -0.9
3,766,081 + Rru_A3266 0.72 -1.0
3,766,081 + Rru_A3266 0.72 +0.1
3,766,081 + Rru_A3266 0.72 -2.4
3,766,081 + Rru_A3266 0.72 -0.5
3,766,087 + Rru_A3266 0.72 -1.6
3,766,087 + Rru_A3266 0.72 +0.1
3,766,087 + Rru_A3266 0.72 +0.1
3,766,088 - Rru_A3266 0.72 +0.1
3,766,443 + +0.1
3,766,527 + Rru_A3267 0.18 -1.4
3,766,527 + Rru_A3267 0.18 -1.4
3,766,527 + Rru_A3267 0.18 +0.1
3,766,527 + Rru_A3267 0.18 -1.2
3,766,528 - Rru_A3267 0.19 -2.4
3,766,528 - Rru_A3267 0.19 -0.9
3,766,528 - Rru_A3267 0.19 -0.9
3,766,671 + Rru_A3267 0.41 +0.1
3,766,671 + Rru_A3267 0.41 -1.0
3,766,671 + Rru_A3267 0.41 -1.3
3,766,671 + Rru_A3267 0.41 -1.0
3,766,833 + Rru_A3267 0.67 +1.2
3,766,842 + Rru_A3267 0.68 +0.1
3,766,843 - Rru_A3267 0.68 -0.9
3,767,366 + Rru_A3268 0.52 +0.4
3,767,406 - Rru_A3268 0.58 +0.1
3,767,737 + Rru_A3269 0.11 +0.1
3,767,737 + Rru_A3269 0.11 +0.9
3,767,737 + Rru_A3269 0.11 +1.3
3,767,738 - Rru_A3269 0.12 +1.0
3,767,763 - Rru_A3269 0.15 +0.1

Or see this region's nucleotide sequence