Experiment: Succinic Acid; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3265 and Rru_A3266 are separated by 188 nucleotides Rru_A3266 and Rru_A3267 overlap by 4 nucleotides Rru_A3267 and Rru_A3268 overlap by 4 nucleotides
Rru_A3265: Rru_A3265 - Chorismate mutase (NCBI), at 3,764,189 to 3,765,049
_A3265
Rru_A3266: Rru_A3266 - Homoserine O-acetyltransferase (NCBI), at 3,765,238 to 3,766,413
_A3266
Rru_A3267: Rru_A3267 - Methionine biosynthesis MetW (NCBI), at 3,766,410 to 3,767,045
_A3267
Rru_A3268: Rru_A3268 - hypothetical protein (NCBI), at 3,767,042 to 3,767,668
_A3268
Position (kb)
3765
3766
3767 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3765.164 kb on + strand at 3765.164 kb on + strand at 3765.164 kb on + strand at 3765.164 kb on + strand at 3765.349 kb on + strand at 3765.349 kb on + strand at 3765.349 kb on + strand at 3765.398 kb on + strand, within Rru_A3266 at 3765.398 kb on + strand, within Rru_A3266 at 3765.399 kb on - strand, within Rru_A3266 at 3765.512 kb on - strand, within Rru_A3266 at 3765.512 kb on - strand, within Rru_A3266 at 3765.512 kb on - strand, within Rru_A3266 at 3765.512 kb on - strand, within Rru_A3266 at 3765.739 kb on + strand, within Rru_A3266 at 3765.924 kb on + strand, within Rru_A3266 at 3765.924 kb on + strand, within Rru_A3266 at 3765.924 kb on + strand, within Rru_A3266 at 3765.931 kb on + strand, within Rru_A3266 at 3765.931 kb on + strand, within Rru_A3266 at 3765.931 kb on + strand, within Rru_A3266 at 3765.931 kb on + strand, within Rru_A3266 at 3765.931 kb on + strand, within Rru_A3266 at 3765.932 kb on - strand, within Rru_A3266 at 3765.932 kb on - strand, within Rru_A3266 at 3765.932 kb on - strand, within Rru_A3266 at 3765.932 kb on - strand, within Rru_A3266 at 3765.932 kb on - strand, within Rru_A3266 at 3765.997 kb on + strand, within Rru_A3266 at 3765.998 kb on - strand, within Rru_A3266 at 3765.998 kb on - strand, within Rru_A3266 at 3765.998 kb on - strand, within Rru_A3266 at 3765.998 kb on - strand, within Rru_A3266 at 3766.081 kb on + strand, within Rru_A3266 at 3766.081 kb on + strand, within Rru_A3266 at 3766.081 kb on + strand, within Rru_A3266 at 3766.081 kb on + strand, within Rru_A3266 at 3766.081 kb on + strand, within Rru_A3266 at 3766.087 kb on + strand, within Rru_A3266 at 3766.087 kb on + strand, within Rru_A3266 at 3766.087 kb on + strand, within Rru_A3266 at 3766.088 kb on - strand, within Rru_A3266 at 3766.443 kb on + strand at 3766.527 kb on + strand, within Rru_A3267 at 3766.527 kb on + strand, within Rru_A3267 at 3766.527 kb on + strand, within Rru_A3267 at 3766.527 kb on + strand, within Rru_A3267 at 3766.528 kb on - strand, within Rru_A3267 at 3766.528 kb on - strand, within Rru_A3267 at 3766.528 kb on - strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.833 kb on + strand, within Rru_A3267 at 3766.842 kb on + strand, within Rru_A3267 at 3766.843 kb on - strand, within Rru_A3267 at 3767.366 kb on + strand, within Rru_A3268 at 3767.406 kb on - strand, within Rru_A3268
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM remove 3,765,164 + +1.1 3,765,164 + +1.5 3,765,164 + +1.2 3,765,164 + +0.1 3,765,349 + +0.1 3,765,349 + +0.1 3,765,349 + -3.0 3,765,398 + Rru_A3266 0.14 -0.9 3,765,398 + Rru_A3266 0.14 -0.9 3,765,399 - Rru_A3266 0.14 +0.1 3,765,512 - Rru_A3266 0.23 -3.7 3,765,512 - Rru_A3266 0.23 +0.1 3,765,512 - Rru_A3266 0.23 +0.1 3,765,512 - Rru_A3266 0.23 +0.1 3,765,739 + Rru_A3266 0.43 +0.1 3,765,924 + Rru_A3266 0.58 +0.1 3,765,924 + Rru_A3266 0.58 +0.1 3,765,924 + Rru_A3266 0.58 -1.5 3,765,931 + Rru_A3266 0.59 -3.4 3,765,931 + Rru_A3266 0.59 -0.6 3,765,931 + Rru_A3266 0.59 -1.3 3,765,931 + Rru_A3266 0.59 -1.9 3,765,931 + Rru_A3266 0.59 -2.7 3,765,932 - Rru_A3266 0.59 -2.0 3,765,932 - Rru_A3266 0.59 +1.7 3,765,932 - Rru_A3266 0.59 +0.1 3,765,932 - Rru_A3266 0.59 -0.3 3,765,932 - Rru_A3266 0.59 +0.1 3,765,997 + Rru_A3266 0.65 -1.2 3,765,998 - Rru_A3266 0.65 +0.1 3,765,998 - Rru_A3266 0.65 +0.1 3,765,998 - Rru_A3266 0.65 +0.1 3,765,998 - Rru_A3266 0.65 +0.1 3,766,081 + Rru_A3266 0.72 -0.9 3,766,081 + Rru_A3266 0.72 -1.0 3,766,081 + Rru_A3266 0.72 +0.1 3,766,081 + Rru_A3266 0.72 -2.4 3,766,081 + Rru_A3266 0.72 -0.5 3,766,087 + Rru_A3266 0.72 -1.6 3,766,087 + Rru_A3266 0.72 +0.1 3,766,087 + Rru_A3266 0.72 +0.1 3,766,088 - Rru_A3266 0.72 +0.1 3,766,443 + +0.1 3,766,527 + Rru_A3267 0.18 -1.4 3,766,527 + Rru_A3267 0.18 -1.4 3,766,527 + Rru_A3267 0.18 +0.1 3,766,527 + Rru_A3267 0.18 -1.2 3,766,528 - Rru_A3267 0.19 -2.4 3,766,528 - Rru_A3267 0.19 -0.9 3,766,528 - Rru_A3267 0.19 -0.9 3,766,671 + Rru_A3267 0.41 +0.1 3,766,671 + Rru_A3267 0.41 -1.0 3,766,671 + Rru_A3267 0.41 -1.3 3,766,671 + Rru_A3267 0.41 -1.0 3,766,833 + Rru_A3267 0.67 +1.2 3,766,842 + Rru_A3267 0.68 +0.1 3,766,843 - Rru_A3267 0.68 -0.9 3,767,366 + Rru_A3268 0.52 +0.4 3,767,406 - Rru_A3268 0.58 +0.1
Or see this region's nucleotide sequence