Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2619

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2618 and Rru_A2619 are separated by 60 nucleotidesRru_A2619 and Rru_A2620 are separated by 5 nucleotidesRru_A2620 and Rru_A2621 are separated by 68 nucleotides Rru_A2618: Rru_A2618 - Polyprenyl synthetase (NCBI), at 3,046,037 to 3,046,954 _A2618 Rru_A2619: Rru_A2619 - Deoxyxylulose-5-phosphate synthase (NCBI), at 3,047,015 to 3,048,952 _A2619 Rru_A2620: Rru_A2620 - Hemolysin A (NCBI), at 3,048,958 to 3,049,752 _A2620 Rru_A2621: Rru_A2621 - Peptidase S49 (NCBI), at 3,049,821 to 3,051,602 _A2621 Position (kb) 3047 3048 3049Strain fitness (log2 ratio) -1 0 1 2 3at 3046.169 kb on + strand, within Rru_A2618at 3047.708 kb on + strand, within Rru_A2619at 3047.708 kb on + strand, within Rru_A2619at 3047.708 kb on + strand, within Rru_A2619at 3047.763 kb on - strand, within Rru_A2619at 3047.763 kb on - strand, within Rru_A2619at 3047.766 kb on - strand, within Rru_A2619at 3047.766 kb on - strand, within Rru_A2619at 3047.984 kb on + strand, within Rru_A2619at 3047.984 kb on + strand, within Rru_A2619at 3047.984 kb on + strand, within Rru_A2619at 3047.986 kb on + strand, within Rru_A2619at 3047.986 kb on + strand, within Rru_A2619at 3049.204 kb on - strand, within Rru_A2620at 3049.215 kb on + strand, within Rru_A2620at 3049.328 kb on - strand, within Rru_A2620at 3049.328 kb on - strand, within Rru_A2620at 3049.328 kb on - strand, within Rru_A2620at 3049.816 kb on + strandat 3049.817 kb on - strandat 3049.817 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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3,046,169 + Rru_A2618 0.14 -0.0
3,047,708 + Rru_A2619 0.36 +0.8
3,047,708 + Rru_A2619 0.36 +1.9
3,047,708 + Rru_A2619 0.36 +2.4
3,047,763 - Rru_A2619 0.39 +3.3
3,047,763 - Rru_A2619 0.39 +2.3
3,047,766 - Rru_A2619 0.39 -0.0
3,047,766 - Rru_A2619 0.39 +2.9
3,047,984 + Rru_A2619 0.50 +1.5
3,047,984 + Rru_A2619 0.50 +0.6
3,047,984 + Rru_A2619 0.50 +1.6
3,047,986 + Rru_A2619 0.50 +1.2
3,047,986 + Rru_A2619 0.50 +0.1
3,049,204 - Rru_A2620 0.31 +2.0
3,049,215 + Rru_A2620 0.32 +2.4
3,049,328 - Rru_A2620 0.47 +1.5
3,049,328 - Rru_A2620 0.47 -0.0
3,049,328 - Rru_A2620 0.47 +2.0
3,049,816 + +1.0
3,049,817 - -0.0
3,049,817 - +1.0

Or see this region's nucleotide sequence