Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2455

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2454 and Rru_A2455 are separated by 385 nucleotidesRru_A2455 and Rru_A2456 are separated by 122 nucleotides Rru_A2454: Rru_A2454 - hypothetical protein (NCBI), at 2,852,859 to 2,853,830 _A2454 Rru_A2455: Rru_A2455 - hypothetical protein (NCBI), at 2,854,216 to 2,854,377 _A2455 Rru_A2456: Rru_A2456 - Phosphoglycerate dehydrogenase (NCBI), at 2,854,500 to 2,855,735 _A2456 Position (kb) 2854 2855Strain fitness (log2 ratio) -2 -1 0 1at 2853.444 kb on + strand, within Rru_A2454at 2853.444 kb on + strand, within Rru_A2454at 2853.444 kb on + strand, within Rru_A2454at 2853.444 kb on + strand, within Rru_A2454at 2853.445 kb on - strand, within Rru_A2454at 2853.520 kb on - strand, within Rru_A2454at 2853.708 kb on + strand, within Rru_A2454at 2853.987 kb on + strandat 2854.011 kb on - strandat 2854.011 kb on - strandat 2854.288 kb on + strand, within Rru_A2455at 2854.288 kb on + strand, within Rru_A2455at 2854.288 kb on + strand, within Rru_A2455at 2854.502 kb on - strandat 2854.502 kb on - strandat 2854.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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2,853,444 + Rru_A2454 0.60 +0.9
2,853,444 + Rru_A2454 0.60 +0.4
2,853,444 + Rru_A2454 0.60 +0.3
2,853,444 + Rru_A2454 0.60 +0.4
2,853,445 - Rru_A2454 0.60 +0.8
2,853,520 - Rru_A2454 0.68 -0.1
2,853,708 + Rru_A2454 0.87 +0.8
2,853,987 + +1.0
2,854,011 - +1.4
2,854,011 - -0.1
2,854,288 + Rru_A2455 0.44 -0.1
2,854,288 + Rru_A2455 0.44 -2.4
2,854,288 + Rru_A2455 0.44 -0.1
2,854,502 - -0.1
2,854,502 - -0.1
2,854,502 - -0.1

Or see this region's nucleotide sequence