Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2207

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2206 and Rru_A2207 are separated by 74 nucleotidesRru_A2207 and Rru_A2208 are separated by 172 nucleotidesRru_A2208 and Rru_A2209 are separated by 186 nucleotides Rru_A2206: Rru_A2206 - tartrate dehydrogenase (NCBI), at 2,561,938 to 2,563,584 _A2206 Rru_A2207: Rru_A2207 - hypothetical protein (NCBI), at 2,563,659 to 2,564,024 _A2207 Rru_A2208: Rru_A2208 - hypothetical protein (NCBI), at 2,564,197 to 2,564,457 _A2208 Rru_A2209: Rru_A2209 - AsmA (NCBI), at 2,564,644 to 2,567,877 _A2209 Position (kb) 2563 2564 2565Strain fitness (log2 ratio) -1 0 1at 2563.684 kb on - strandat 2563.765 kb on - strand, within Rru_A2207at 2563.765 kb on - strand, within Rru_A2207at 2563.765 kb on - strand, within Rru_A2207at 2563.843 kb on - strand, within Rru_A2207at 2563.843 kb on - strand, within Rru_A2207at 2563.843 kb on - strand, within Rru_A2207at 2564.428 kb on + strand, within Rru_A2208at 2564.428 kb on + strand, within Rru_A2208at 2564.428 kb on + strand, within Rru_A2208at 2564.428 kb on + strand, within Rru_A2208at 2564.428 kb on + strand, within Rru_A2208at 2564.428 kb on + strand, within Rru_A2208at 2564.429 kb on - strand, within Rru_A2208at 2564.429 kb on - strand, within Rru_A2208at 2564.429 kb on - strand, within Rru_A2208at 2564.429 kb on - strand, within Rru_A2208at 2564.429 kb on - strand, within Rru_A2208at 2564.429 kb on - strand, within Rru_A2208at 2564.429 kb on - strand, within Rru_A2208at 2564.472 kb on + strandat 2564.594 kb on + strandat 2564.793 kb on + strandat 2564.793 kb on + strandat 2564.793 kb on + strandat 2564.793 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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2,563,684 - -1.1
2,563,765 - Rru_A2207 0.29 +0.4
2,563,765 - Rru_A2207 0.29 -0.1
2,563,765 - Rru_A2207 0.29 +0.2
2,563,843 - Rru_A2207 0.50 +0.1
2,563,843 - Rru_A2207 0.50 +0.7
2,563,843 - Rru_A2207 0.50 +0.1
2,564,428 + Rru_A2208 0.89 -0.1
2,564,428 + Rru_A2208 0.89 +1.0
2,564,428 + Rru_A2208 0.89 +1.0
2,564,428 + Rru_A2208 0.89 +1.6
2,564,428 + Rru_A2208 0.89 -0.1
2,564,428 + Rru_A2208 0.89 -0.1
2,564,429 - Rru_A2208 0.89 +1.1
2,564,429 - Rru_A2208 0.89 +1.4
2,564,429 - Rru_A2208 0.89 +1.0
2,564,429 - Rru_A2208 0.89 +1.2
2,564,429 - Rru_A2208 0.89 +0.5
2,564,429 - Rru_A2208 0.89 -1.7
2,564,429 - Rru_A2208 0.89 +1.7
2,564,472 + +0.9
2,564,594 + +1.3
2,564,793 + -0.1
2,564,793 + -0.2
2,564,793 + +0.8
2,564,793 + +0.8

Or see this region's nucleotide sequence