Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2149

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2148 and Rru_A2149 are separated by 707 nucleotidesRru_A2149 and Rru_A2150 are separated by 182 nucleotides Rru_A2148: Rru_A2148 - N-acetylmuramoyl-L-alanine amidase (NCBI), at 2,493,887 to 2,495,455 _A2148 Rru_A2149: Rru_A2149 - Ribonuclease E and G (NCBI), at 2,496,163 to 2,498,832 _A2149 Rru_A2150: Rru_A2150 - hypothetical protein (NCBI), at 2,499,015 to 2,499,413 _A2150 Position (kb) 2496 2497 2498 2499Strain fitness (log2 ratio) -1 0 1 2at 2495.446 kb on - strandat 2495.446 kb on - strandat 2495.446 kb on - strandat 2495.446 kb on - strandat 2495.446 kb on - strandat 2495.479 kb on - strandat 2495.516 kb on - strandat 2495.535 kb on - strandat 2495.551 kb on - strandat 2496.037 kb on + strandat 2496.058 kb on + strandat 2498.946 kb on + strandat 2498.946 kb on + strandat 2498.946 kb on + strandat 2498.946 kb on + strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2499.553 kb on + strandat 2499.553 kb on + strandat 2499.553 kb on + strandat 2499.553 kb on + strandat 2499.554 kb on - strandat 2499.554 kb on - strandat 2499.564 kb on + strandat 2499.564 kb on + strandat 2499.565 kb on - strandat 2499.608 kb on + strandat 2499.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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2,495,446 - -0.1
2,495,446 - -0.1
2,495,446 - +1.0
2,495,446 - +1.3
2,495,446 - -0.1
2,495,479 - -0.1
2,495,516 - +1.9
2,495,535 - -0.1
2,495,551 - -0.1
2,496,037 + -0.1
2,496,058 + -0.1
2,498,946 + +1.0
2,498,946 + -0.1
2,498,946 + +0.3
2,498,946 + +0.9
2,498,947 - -0.1
2,498,947 - -0.1
2,498,947 - +1.1
2,498,947 - +0.7
2,498,947 - +0.3
2,498,947 - +0.7
2,498,947 - -0.1
2,498,947 - +0.3
2,498,947 - +0.2
2,498,947 - +0.8
2,499,553 + -0.1
2,499,553 + +0.7
2,499,553 + +1.4
2,499,553 + +1.4
2,499,554 - -0.1
2,499,554 - +0.9
2,499,564 + +0.9
2,499,564 + +1.7
2,499,565 - +0.6
2,499,608 + +0.7
2,499,830 - +1.3

Or see this region's nucleotide sequence