Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1663

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1661 and Rru_A1662 are separated by 39 nucleotidesRru_A1662 and Rru_A1663 are separated by 250 nucleotidesRru_A1663 and Rru_A1664 are separated by 1 nucleotidesRru_A1664 and Rru_A1665 are separated by 109 nucleotidesRru_A1665 and Rru_A1666 are separated by 43 nucleotides Rru_A1661: Rru_A1661 - Extensin-like (NCBI), at 1,953,505 to 1,954,200 _A1661 Rru_A1662: Rru_A1662 - SmpA/OmlA (NCBI), at 1,954,240 to 1,954,707 _A1662 Rru_A1663: Rru_A1663 - Ubiquinol-cytochrome C chaperone (NCBI), at 1,954,958 to 1,955,566 _A1663 Rru_A1664: Rru_A1664 - conserved hypothetical cytosolic protein (NCBI), at 1,955,568 to 1,956,149 _A1664 Rru_A1665: Rru_A1665 - Ribosomal protein S32 (NCBI), at 1,956,259 to 1,956,444 _A1665 Rru_A1666: Rru_A1666 - Fatty acid synthesis plsX protein (NCBI), at 1,956,488 to 1,957,537 _A1666 Position (kb) 1954 1955 1956Strain fitness (log2 ratio) -1 0 1 2 3at 1953.984 kb on - strand, within Rru_A1661at 1954.107 kb on + strand, within Rru_A1661at 1954.107 kb on + strand, within Rru_A1661at 1954.778 kb on - strandat 1954.778 kb on - strandat 1954.778 kb on - strandat 1955.015 kb on + strandat 1955.015 kb on + strandat 1955.054 kb on + strand, within Rru_A1663at 1955.054 kb on + strand, within Rru_A1663at 1955.055 kb on - strand, within Rru_A1663at 1955.055 kb on - strand, within Rru_A1663at 1955.094 kb on - strand, within Rru_A1663at 1955.262 kb on - strand, within Rru_A1663at 1955.263 kb on + strand, within Rru_A1663at 1955.263 kb on + strand, within Rru_A1663at 1955.263 kb on + strand, within Rru_A1663at 1955.263 kb on + strand, within Rru_A1663at 1955.263 kb on + strand, within Rru_A1663at 1955.264 kb on - strand, within Rru_A1663at 1955.264 kb on - strand, within Rru_A1663at 1955.264 kb on - strand, within Rru_A1663at 1955.264 kb on - strand, within Rru_A1663at 1955.264 kb on - strand, within Rru_A1663at 1955.303 kb on + strand, within Rru_A1663at 1955.303 kb on + strand, within Rru_A1663at 1955.303 kb on + strand, within Rru_A1663at 1955.303 kb on + strand, within Rru_A1663at 1955.304 kb on - strand, within Rru_A1663at 1955.304 kb on - strand, within Rru_A1663at 1955.321 kb on + strand, within Rru_A1663at 1955.322 kb on - strand, within Rru_A1663at 1955.322 kb on - strand, within Rru_A1663at 1955.375 kb on + strand, within Rru_A1663at 1955.375 kb on + strand, within Rru_A1663at 1955.375 kb on + strand, within Rru_A1663at 1955.423 kb on + strand, within Rru_A1663at 1955.423 kb on + strand, within Rru_A1663at 1955.423 kb on + strand, within Rru_A1663at 1955.423 kb on + strand, within Rru_A1663at 1955.423 kb on + strand, within Rru_A1663at 1955.423 kb on + strand, within Rru_A1663at 1955.424 kb on - strand, within Rru_A1663at 1955.424 kb on - strand, within Rru_A1663at 1955.424 kb on - strand, within Rru_A1663at 1955.425 kb on + strand, within Rru_A1663at 1955.425 kb on + strand, within Rru_A1663at 1955.425 kb on + strand, within Rru_A1663at 1955.426 kb on - strand, within Rru_A1663at 1955.426 kb on - strand, within Rru_A1663at 1955.426 kb on - strand, within Rru_A1663

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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1,953,984 - Rru_A1661 0.69 +0.7
1,954,107 + Rru_A1661 0.86 -1.1
1,954,107 + Rru_A1661 0.86 -0.1
1,954,778 - +0.0
1,954,778 - +1.0
1,954,778 - -0.1
1,955,015 + -0.1
1,955,015 + -0.1
1,955,054 + Rru_A1663 0.16 +1.9
1,955,054 + Rru_A1663 0.16 +0.7
1,955,055 - Rru_A1663 0.16 +1.5
1,955,055 - Rru_A1663 0.16 -0.1
1,955,094 - Rru_A1663 0.22 +2.7
1,955,262 - Rru_A1663 0.50 -0.1
1,955,263 + Rru_A1663 0.50 +1.4
1,955,263 + Rru_A1663 0.50 -0.7
1,955,263 + Rru_A1663 0.50 -0.1
1,955,263 + Rru_A1663 0.50 -0.4
1,955,263 + Rru_A1663 0.50 +1.1
1,955,264 - Rru_A1663 0.50 +0.8
1,955,264 - Rru_A1663 0.50 +0.9
1,955,264 - Rru_A1663 0.50 +0.7
1,955,264 - Rru_A1663 0.50 +0.9
1,955,264 - Rru_A1663 0.50 +1.2
1,955,303 + Rru_A1663 0.57 +1.2
1,955,303 + Rru_A1663 0.57 +0.5
1,955,303 + Rru_A1663 0.57 +1.2
1,955,303 + Rru_A1663 0.57 +1.5
1,955,304 - Rru_A1663 0.57 -0.1
1,955,304 - Rru_A1663 0.57 -0.1
1,955,321 + Rru_A1663 0.60 -0.1
1,955,322 - Rru_A1663 0.60 +1.6
1,955,322 - Rru_A1663 0.60 -0.1
1,955,375 + Rru_A1663 0.68 +1.3
1,955,375 + Rru_A1663 0.68 +0.3
1,955,375 + Rru_A1663 0.68 +1.1
1,955,423 + Rru_A1663 0.76 -0.1
1,955,423 + Rru_A1663 0.76 -0.1
1,955,423 + Rru_A1663 0.76 +0.2
1,955,423 + Rru_A1663 0.76 +0.7
1,955,423 + Rru_A1663 0.76 -0.1
1,955,423 + Rru_A1663 0.76 -0.1
1,955,424 - Rru_A1663 0.77 -1.1
1,955,424 - Rru_A1663 0.77 -0.1
1,955,424 - Rru_A1663 0.77 -1.1
1,955,425 + Rru_A1663 0.77 -0.1
1,955,425 + Rru_A1663 0.77 +1.0
1,955,425 + Rru_A1663 0.77 +2.8
1,955,426 - Rru_A1663 0.77 -0.1
1,955,426 - Rru_A1663 0.77 +1.5
1,955,426 - Rru_A1663 0.77 -0.1

Or see this region's nucleotide sequence