Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1219

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1217 and Rru_A1218 are separated by 103 nucleotidesRru_A1218 and Rru_A1219 are separated by 189 nucleotidesRru_A1219 and Rru_A1220 are separated by 34 nucleotides Rru_A1217: Rru_A1217 - Phage shock B (NCBI), at 1,437,676 to 1,437,924 _A1217 Rru_A1218: Rru_A1218 - phage shock protein A, PspA (NCBI), at 1,438,028 to 1,438,708 _A1218 Rru_A1219: Rru_A1219 - Sigma54 Specific Transcriptional Regulator containing PAS, and Fis DNA-binding domains (NCBI), at 1,438,898 to 1,439,908 _A1219 Rru_A1220: Rru_A1220 - Phage integrase (NCBI), at 1,439,943 to 1,440,935 _A1220 Position (kb) 1438 1439 1440Strain fitness (log2 ratio) -1 0 1at 1437.917 kb on - strandat 1437.917 kb on - strandat 1437.917 kb on - strandat 1437.917 kb on - strandat 1437.917 kb on - strandat 1438.155 kb on + strand, within Rru_A1218at 1438.155 kb on + strand, within Rru_A1218at 1438.259 kb on + strand, within Rru_A1218at 1438.260 kb on - strand, within Rru_A1218at 1438.886 kb on - strandat 1439.045 kb on + strand, within Rru_A1219at 1439.045 kb on + strand, within Rru_A1219at 1439.045 kb on + strand, within Rru_A1219at 1439.045 kb on + strand, within Rru_A1219at 1439.045 kb on + strand, within Rru_A1219at 1439.046 kb on - strand, within Rru_A1219at 1439.046 kb on - strand, within Rru_A1219at 1439.046 kb on - strand, within Rru_A1219at 1439.046 kb on - strand, within Rru_A1219at 1439.587 kb on + strand, within Rru_A1219at 1439.588 kb on - strand, within Rru_A1219at 1439.588 kb on - strand, within Rru_A1219at 1439.769 kb on - strand, within Rru_A1219at 1439.784 kb on + strand, within Rru_A1219at 1439.785 kb on - strand, within Rru_A1219at 1439.785 kb on - strand, within Rru_A1219at 1439.906 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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1,437,917 - -0.0
1,437,917 - -0.1
1,437,917 - -0.4
1,437,917 - +0.5
1,437,917 - +0.2
1,438,155 + Rru_A1218 0.19 -0.1
1,438,155 + Rru_A1218 0.19 +0.8
1,438,259 + Rru_A1218 0.34 -0.1
1,438,260 - Rru_A1218 0.34 -0.1
1,438,886 - +1.0
1,439,045 + Rru_A1219 0.15 +0.3
1,439,045 + Rru_A1219 0.15 -0.2
1,439,045 + Rru_A1219 0.15 -1.2
1,439,045 + Rru_A1219 0.15 +0.5
1,439,045 + Rru_A1219 0.15 +0.3
1,439,046 - Rru_A1219 0.15 -0.3
1,439,046 - Rru_A1219 0.15 +0.9
1,439,046 - Rru_A1219 0.15 -0.1
1,439,046 - Rru_A1219 0.15 -0.1
1,439,587 + Rru_A1219 0.68 +0.1
1,439,588 - Rru_A1219 0.68 -1.3
1,439,588 - Rru_A1219 0.68 +0.9
1,439,769 - Rru_A1219 0.86 +0.7
1,439,784 + Rru_A1219 0.88 -0.1
1,439,785 - Rru_A1219 0.88 +0.2
1,439,785 - Rru_A1219 0.88 -0.1
1,439,906 + -0.1

Or see this region's nucleotide sequence