Experiment: Succinic Acid; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1215 and Rru_A1216 are separated by 94 nucleotides Rru_A1216 and Rru_A1217 overlap by 4 nucleotides Rru_A1217 and Rru_A1218 are separated by 103 nucleotides Rru_A1218 and Rru_A1219 are separated by 189 nucleotides
Rru_A1215: Rru_A1215 - Dihydrolipoamide dehydrogenase (NCBI), at 1,435,699 to 1,437,099
_A1215
Rru_A1216: Rru_A1216 - hypothetical protein (NCBI), at 1,437,194 to 1,437,679
_A1216
Rru_A1217: Rru_A1217 - Phage shock B (NCBI), at 1,437,676 to 1,437,924
_A1217
Rru_A1218: Rru_A1218 - phage shock protein A, PspA (NCBI), at 1,438,028 to 1,438,708
_A1218
Rru_A1219: Rru_A1219 - Sigma54 Specific Transcriptional Regulator containing PAS, and Fis DNA-binding domains (NCBI), at 1,438,898 to 1,439,908
_A1219
Position (kb) 1437
1438 Strain fitness (log2 ratio) -2
-1
0
1 at 1437.093 kb on + strand at 1437.093 kb on + strand at 1437.195 kb on + strand at 1437.255 kb on + strand, within Rru_A1216 at 1437.255 kb on + strand, within Rru_A1216 at 1437.255 kb on + strand, within Rru_A1216 at 1437.255 kb on + strand, within Rru_A1216 at 1437.256 kb on - strand, within Rru_A1216 at 1437.483 kb on + strand, within Rru_A1216 at 1437.483 kb on + strand, within Rru_A1216 at 1437.484 kb on - strand, within Rru_A1216 at 1437.748 kb on - strand, within Rru_A1217 at 1437.845 kb on + strand, within Rru_A1217 at 1437.845 kb on + strand, within Rru_A1217 at 1437.845 kb on + strand, within Rru_A1217 at 1437.845 kb on + strand, within Rru_A1217 at 1437.845 kb on + strand, within Rru_A1217 at 1437.846 kb on - strand, within Rru_A1217 at 1437.846 kb on - strand, within Rru_A1217 at 1437.846 kb on - strand, within Rru_A1217 at 1437.917 kb on - strand at 1437.917 kb on - strand at 1437.917 kb on - strand at 1437.917 kb on - strand at 1437.917 kb on - strand at 1438.155 kb on + strand, within Rru_A1218 at 1438.155 kb on + strand, within Rru_A1218 at 1438.259 kb on + strand, within Rru_A1218 at 1438.260 kb on - strand, within Rru_A1218 at 1438.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM remove 1,437,093 + -0.1 1,437,093 + -0.1 1,437,195 + -0.1 1,437,255 + Rru_A1216 0.13 -0.1 1,437,255 + Rru_A1216 0.13 +0.2 1,437,255 + Rru_A1216 0.13 +0.3 1,437,255 + Rru_A1216 0.13 -0.1 1,437,256 - Rru_A1216 0.13 -0.1 1,437,483 + Rru_A1216 0.59 -0.1 1,437,483 + Rru_A1216 0.59 +0.0 1,437,484 - Rru_A1216 0.60 -2.3 1,437,748 - Rru_A1217 0.29 -1.1 1,437,845 + Rru_A1217 0.68 -0.1 1,437,845 + Rru_A1217 0.68 -0.1 1,437,845 + Rru_A1217 0.68 -0.1 1,437,845 + Rru_A1217 0.68 +0.4 1,437,845 + Rru_A1217 0.68 +0.0 1,437,846 - Rru_A1217 0.68 -0.1 1,437,846 - Rru_A1217 0.68 -0.1 1,437,846 - Rru_A1217 0.68 -1.0 1,437,917 - -0.0 1,437,917 - -0.1 1,437,917 - -0.4 1,437,917 - +0.5 1,437,917 - +0.2 1,438,155 + Rru_A1218 0.19 -0.1 1,438,155 + Rru_A1218 0.19 +0.8 1,438,259 + Rru_A1218 0.34 -0.1 1,438,260 - Rru_A1218 0.34 -0.1 1,438,886 - +1.0
Or see this region's nucleotide sequence