Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0578

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0577 and Rru_A0578 are separated by 234 nucleotidesRru_A0578 and Rru_A0579 are separated by 46 nucleotides Rru_A0577: Rru_A0577 - hypothetical protein (NCBI), at 685,999 to 686,970 _A0577 Rru_A0578: Rru_A0578 - Metallophosphoesterase (NCBI), at 687,205 to 688,182 _A0578 Rru_A0579: Rru_A0579 - Glycosyl transferase, group 1 (NCBI), at 688,229 to 689,302 _A0579 Position (kb) 687 688 689Strain fitness (log2 ratio) -1 0 1 2at 686.409 kb on + strand, within Rru_A0577at 686.420 kb on + strand, within Rru_A0577at 686.420 kb on + strand, within Rru_A0577at 686.420 kb on + strand, within Rru_A0577at 686.420 kb on + strand, within Rru_A0577at 686.421 kb on - strand, within Rru_A0577at 686.561 kb on + strand, within Rru_A0577at 686.561 kb on + strand, within Rru_A0577at 686.561 kb on + strand, within Rru_A0577at 686.562 kb on - strand, within Rru_A0577at 686.562 kb on - strand, within Rru_A0577at 686.562 kb on - strand, within Rru_A0577at 686.905 kb on - strandat 687.011 kb on - strandat 687.193 kb on + strandat 687.436 kb on + strand, within Rru_A0578at 687.436 kb on + strand, within Rru_A0578at 687.436 kb on + strand, within Rru_A0578at 687.436 kb on + strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.592 kb on + strand, within Rru_A0578at 687.706 kb on + strand, within Rru_A0578at 687.706 kb on + strand, within Rru_A0578at 687.742 kb on + strand, within Rru_A0578at 687.742 kb on + strand, within Rru_A0578at 687.743 kb on - strand, within Rru_A0578at 687.743 kb on - strand, within Rru_A0578at 687.743 kb on - strand, within Rru_A0578at 687.762 kb on + strand, within Rru_A0578at 687.806 kb on - strand, within Rru_A0578at 687.824 kb on - strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 688.235 kb on - strandat 688.235 kb on - strandat 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.338 kb on - strand, within Rru_A0579at 688.338 kb on - strand, within Rru_A0579at 688.338 kb on - strand, within Rru_A0579at 688.338 kb on - strand, within Rru_A0579at 688.338 kb on - strand, within Rru_A0579at 688.379 kb on + strand, within Rru_A0579at 688.379 kb on + strand, within Rru_A0579at 688.381 kb on + strand, within Rru_A0579at 688.382 kb on - strand, within Rru_A0579at 688.382 kb on - strand, within Rru_A0579at 688.485 kb on + strand, within Rru_A0579at 688.485 kb on + strand, within Rru_A0579at 688.486 kb on - strand, within Rru_A0579at 688.500 kb on - strand, within Rru_A0579at 688.556 kb on + strand, within Rru_A0579at 688.595 kb on + strand, within Rru_A0579at 688.596 kb on - strand, within Rru_A0579at 688.596 kb on - strand, within Rru_A0579at 688.596 kb on - strand, within Rru_A0579at 688.790 kb on + strand, within Rru_A0579at 688.790 kb on + strand, within Rru_A0579at 688.790 kb on + strand, within Rru_A0579at 688.791 kb on - strand, within Rru_A0579at 688.791 kb on - strand, within Rru_A0579at 688.955 kb on + strand, within Rru_A0579at 688.956 kb on - strand, within Rru_A0579at 688.956 kb on - strand, within Rru_A0579at 689.054 kb on + strand, within Rru_A0579

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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686,409 + Rru_A0577 0.42 +0.2
686,420 + Rru_A0577 0.43 +0.8
686,420 + Rru_A0577 0.43 +2.0
686,420 + Rru_A0577 0.43 +1.1
686,420 + Rru_A0577 0.43 -0.1
686,421 - Rru_A0577 0.43 -0.0
686,561 + Rru_A0577 0.58 -0.0
686,561 + Rru_A0577 0.58 -0.0
686,561 + Rru_A0577 0.58 -0.0
686,562 - Rru_A0577 0.58 -0.0
686,562 - Rru_A0577 0.58 -0.0
686,562 - Rru_A0577 0.58 +0.5
686,905 - +0.8
687,011 - -1.0
687,193 + -0.0
687,436 + Rru_A0578 0.24 -0.0
687,436 + Rru_A0578 0.24 +0.8
687,436 + Rru_A0578 0.24 -0.0
687,436 + Rru_A0578 0.24 -0.0
687,437 - Rru_A0578 0.24 +0.7
687,437 - Rru_A0578 0.24 -0.0
687,437 - Rru_A0578 0.24 +0.9
687,437 - Rru_A0578 0.24 -0.0
687,592 + Rru_A0578 0.40 +0.3
687,706 + Rru_A0578 0.51 +0.8
687,706 + Rru_A0578 0.51 -0.0
687,742 + Rru_A0578 0.55 -1.0
687,742 + Rru_A0578 0.55 +0.6
687,743 - Rru_A0578 0.55 +1.3
687,743 - Rru_A0578 0.55 -1.0
687,743 - Rru_A0578 0.55 -0.0
687,762 + Rru_A0578 0.57 -0.0
687,806 - Rru_A0578 0.61 +1.3
687,824 - Rru_A0578 0.63 +0.5
687,856 + Rru_A0578 0.67 +0.2
687,856 + Rru_A0578 0.67 -0.0
687,856 + Rru_A0578 0.67 -0.0
687,856 + Rru_A0578 0.67 +1.0
688,235 - +0.3
688,235 - +0.3
688,337 + Rru_A0579 0.10 +1.0
688,337 + Rru_A0579 0.10 -0.1
688,337 + Rru_A0579 0.10 +1.3
688,337 + Rru_A0579 0.10 +1.0
688,337 + Rru_A0579 0.10 +0.3
688,337 + Rru_A0579 0.10 +1.0
688,337 + Rru_A0579 0.10 -0.0
688,337 + Rru_A0579 0.10 +0.1
688,337 + Rru_A0579 0.10 +1.0
688,337 + Rru_A0579 0.10 -1.6
688,337 + Rru_A0579 0.10 -0.0
688,338 - Rru_A0579 0.10 +1.0
688,338 - Rru_A0579 0.10 +0.5
688,338 - Rru_A0579 0.10 -0.0
688,338 - Rru_A0579 0.10 +1.0
688,338 - Rru_A0579 0.10 +0.5
688,379 + Rru_A0579 0.14 -0.0
688,379 + Rru_A0579 0.14 +1.9
688,381 + Rru_A0579 0.14 +1.3
688,382 - Rru_A0579 0.14 +0.5
688,382 - Rru_A0579 0.14 +0.7
688,485 + Rru_A0579 0.24 -0.0
688,485 + Rru_A0579 0.24 +0.8
688,486 - Rru_A0579 0.24 +0.9
688,500 - Rru_A0579 0.25 -0.0
688,556 + Rru_A0579 0.30 +1.1
688,595 + Rru_A0579 0.34 -0.0
688,596 - Rru_A0579 0.34 +1.1
688,596 - Rru_A0579 0.34 +0.7
688,596 - Rru_A0579 0.34 +0.2
688,790 + Rru_A0579 0.52 +1.1
688,790 + Rru_A0579 0.52 -0.0
688,790 + Rru_A0579 0.52 -0.0
688,791 - Rru_A0579 0.52 -0.0
688,791 - Rru_A0579 0.52 +0.5
688,955 + Rru_A0579 0.68 +1.9
688,956 - Rru_A0579 0.68 +0.9
688,956 - Rru_A0579 0.68 +1.3
689,054 + Rru_A0579 0.77 +0.3

Or see this region's nucleotide sequence