Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0496

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0494 and Rru_A0495 are separated by 6 nucleotidesRru_A0495 and Rru_A0496 are separated by 127 nucleotidesRru_A0496 and Rru_A0497 are separated by 45 nucleotides Rru_A0494: Rru_A0494 - Squalene/phytoene synthase (NCBI), at 580,336 to 581,364 _A0494 Rru_A0495: Rru_A0495 - hypothetical protein (NCBI), at 581,371 to 581,706 _A0495 Rru_A0496: Rru_A0496 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 581,834 to 582,223 _A0496 Rru_A0497: Rru_A0497 - ABC transporter component (NCBI), at 582,269 to 583,369 _A0497 Position (kb) 581 582 583Strain fitness (log2 ratio) -2 -1 0 1 2at 580.867 kb on + strand, within Rru_A0494at 580.867 kb on + strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.991 kb on - strand, within Rru_A0494at 580.991 kb on - strand, within Rru_A0494at 581.065 kb on + strand, within Rru_A0494at 581.200 kb on + strand, within Rru_A0494at 581.200 kb on + strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.412 kb on + strand, within Rru_A0495at 581.466 kb on - strand, within Rru_A0495at 581.527 kb on - strand, within Rru_A0495at 581.587 kb on + strand, within Rru_A0495at 581.588 kb on - strand, within Rru_A0495at 581.588 kb on - strand, within Rru_A0495at 581.590 kb on - strand, within Rru_A0495at 581.704 kb on + strandat 581.704 kb on + strandat 581.757 kb on + strandat 581.762 kb on + strandat 581.762 kb on + strandat 581.763 kb on - strandat 581.934 kb on - strand, within Rru_A0496at 581.934 kb on - strand, within Rru_A0496at 581.934 kb on - strand, within Rru_A0496at 582.222 kb on - strandat 582.222 kb on - strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.291 kb on - strandat 582.372 kb on + strandat 582.372 kb on + strandat 582.372 kb on + strandat 582.373 kb on - strandat 582.373 kb on - strandat 582.373 kb on - strandat 582.373 kb on - strandat 582.666 kb on + strand, within Rru_A0497at 582.666 kb on + strand, within Rru_A0497at 582.667 kb on - strand, within Rru_A0497at 582.667 kb on - strand, within Rru_A0497at 582.667 kb on - strand, within Rru_A0497at 582.667 kb on - strand, within Rru_A0497at 582.936 kb on + strand, within Rru_A0497at 582.936 kb on + strand, within Rru_A0497at 582.943 kb on - strand, within Rru_A0497at 583.080 kb on + strand, within Rru_A0497at 583.149 kb on - strand, within Rru_A0497

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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580,867 + Rru_A0494 0.52 +1.7
580,867 + Rru_A0494 0.52 -1.0
580,868 - Rru_A0494 0.52 -2.3
580,868 - Rru_A0494 0.52 +0.0
580,868 - Rru_A0494 0.52 +0.0
580,990 + Rru_A0494 0.64 +0.0
580,990 + Rru_A0494 0.64 -1.0
580,990 + Rru_A0494 0.64 -1.7
580,991 - Rru_A0494 0.64 -1.6
580,991 - Rru_A0494 0.64 -0.4
581,065 + Rru_A0494 0.71 +0.0
581,200 + Rru_A0494 0.84 -0.8
581,200 + Rru_A0494 0.84 +0.0
581,201 - Rru_A0494 0.84 +0.0
581,201 - Rru_A0494 0.84 -0.6
581,201 - Rru_A0494 0.84 +0.0
581,412 + Rru_A0495 0.12 +0.5
581,466 - Rru_A0495 0.28 +0.0
581,527 - Rru_A0495 0.46 +0.0
581,587 + Rru_A0495 0.64 +0.0
581,588 - Rru_A0495 0.65 +1.3
581,588 - Rru_A0495 0.65 -1.0
581,590 - Rru_A0495 0.65 +0.0
581,704 + +0.9
581,704 + +0.8
581,757 + +0.0
581,762 + +0.2
581,762 + +0.0
581,763 - +0.0
581,934 - Rru_A0496 0.26 +0.3
581,934 - Rru_A0496 0.26 +0.0
581,934 - Rru_A0496 0.26 +0.0
582,222 - +0.0
582,222 - +1.2
582,270 + +0.0
582,270 + +1.5
582,270 + +0.5
582,270 + +1.6
582,270 + +0.0
582,271 - +0.9
582,271 - -1.0
582,271 - +0.0
582,271 - +0.0
582,291 - +0.0
582,372 + +2.1
582,372 + +0.0
582,372 + +1.4
582,373 - +2.6
582,373 - -0.0
582,373 - +1.3
582,373 - +0.0
582,666 + Rru_A0497 0.36 +1.2
582,666 + Rru_A0497 0.36 +1.2
582,667 - Rru_A0497 0.36 -0.0
582,667 - Rru_A0497 0.36 +0.2
582,667 - Rru_A0497 0.36 -0.2
582,667 - Rru_A0497 0.36 -1.0
582,936 + Rru_A0497 0.61 +0.6
582,936 + Rru_A0497 0.61 +0.3
582,943 - Rru_A0497 0.61 +0.0
583,080 + Rru_A0497 0.74 +0.0
583,149 - Rru_A0497 0.80 +0.0

Or see this region's nucleotide sequence