Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0387

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0385 and Rru_A0386 are separated by 57 nucleotidesRru_A0386 and Rru_A0387 are separated by 75 nucleotidesRru_A0387 and Rru_A0388 are separated by 74 nucleotides Rru_A0385: Rru_A0385 - Gamma-glutamyltransferase (NCBI), at 462,542 to 464,272 _A0385 Rru_A0386: Rru_A0386 - Transcriptional Regulator, ArsR family (NCBI), at 464,330 to 465,022 _A0386 Rru_A0387: Rru_A0387 - Antibiotic biosynthesis monooxygenase (NCBI), at 465,098 to 465,487 _A0387 Rru_A0388: Rru_A0388 - Protein of unknown function DUF6, transmembrane (NCBI), at 465,562 to 466,524 _A0388 Rru_A0389: Rru_A0389 - Antibiotic biosynthesis monooxygenase (NCBI), at 466,466 to 466,756 _A0389 Position (kb) 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 464.123 kb on - strandat 464.152 kb on + strandat 464.152 kb on + strandat 464.164 kb on - strandat 464.222 kb on + strandat 464.222 kb on + strandat 464.268 kb on - strandat 464.622 kb on + strand, within Rru_A0386at 464.623 kb on - strand, within Rru_A0386at 464.623 kb on - strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.894 kb on + strand, within Rru_A0386at 464.895 kb on - strand, within Rru_A0386at 464.959 kb on + strandat 464.960 kb on - strandat 464.960 kb on - strandat 464.960 kb on - strandat 465.022 kb on + strandat 465.034 kb on - strandat 465.064 kb on - strandat 465.149 kb on + strand, within Rru_A0387at 465.149 kb on + strand, within Rru_A0387at 465.149 kb on + strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.260 kb on + strand, within Rru_A0387at 465.354 kb on - strand, within Rru_A0387at 465.386 kb on + strand, within Rru_A0387at 465.386 kb on + strand, within Rru_A0387at 465.387 kb on - strand, within Rru_A0387at 465.486 kb on - strandat 465.486 kb on - strandat 465.579 kb on - strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.724 kb on - strand, within Rru_A0388at 465.724 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.267 kb on + strand, within Rru_A0388at 466.267 kb on + strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.318 kb on + strand, within Rru_A0388at 466.319 kb on - strand, within Rru_A0388

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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464,123 - +0.0
464,152 + +0.3
464,152 + +0.9
464,164 - +0.9
464,222 + +2.0
464,222 + +0.0
464,268 - +0.5
464,622 + Rru_A0386 0.42 -1.6
464,623 - Rru_A0386 0.42 +0.7
464,623 - Rru_A0386 0.42 +0.6
464,682 + Rru_A0386 0.51 +0.0
464,682 + Rru_A0386 0.51 +0.7
464,682 + Rru_A0386 0.51 +0.0
464,682 + Rru_A0386 0.51 -0.4
464,682 + Rru_A0386 0.51 +0.0
464,682 + Rru_A0386 0.51 +0.4
464,682 + Rru_A0386 0.51 +0.7
464,683 - Rru_A0386 0.51 -1.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 -1.1
464,683 - Rru_A0386 0.51 +0.1
464,683 - Rru_A0386 0.51 +0.6
464,683 - Rru_A0386 0.51 +1.2
464,683 - Rru_A0386 0.51 +0.0
464,811 + Rru_A0386 0.69 +0.0
464,811 + Rru_A0386 0.69 +1.1
464,811 + Rru_A0386 0.69 +0.0
464,812 - Rru_A0386 0.70 +0.2
464,812 - Rru_A0386 0.70 +0.0
464,812 - Rru_A0386 0.70 +1.8
464,812 - Rru_A0386 0.70 +0.0
464,812 - Rru_A0386 0.70 +1.2
464,867 + Rru_A0386 0.77 +0.0
464,867 + Rru_A0386 0.77 +0.0
464,867 + Rru_A0386 0.77 +0.0
464,868 - Rru_A0386 0.78 +0.0
464,868 - Rru_A0386 0.78 +0.2
464,868 - Rru_A0386 0.78 +0.7
464,868 - Rru_A0386 0.78 -1.0
464,894 + Rru_A0386 0.81 +0.0
464,895 - Rru_A0386 0.82 +0.5
464,959 + +0.0
464,960 - +0.3
464,960 - +0.7
464,960 - -1.0
465,022 + +0.6
465,034 - +1.2
465,064 - +0.0
465,149 + Rru_A0387 0.13 -3.3
465,149 + Rru_A0387 0.13 -0.6
465,149 + Rru_A0387 0.13 +0.0
465,150 - Rru_A0387 0.13 +1.1
465,150 - Rru_A0387 0.13 +0.3
465,150 - Rru_A0387 0.13 -1.0
465,260 + Rru_A0387 0.42 +0.0
465,354 - Rru_A0387 0.66 +0.3
465,386 + Rru_A0387 0.74 -0.8
465,386 + Rru_A0387 0.74 -0.8
465,387 - Rru_A0387 0.74 +1.0
465,486 - +1.0
465,486 - +1.0
465,579 - +2.9
465,634 + +1.0
465,634 + +0.0
465,634 + +0.9
465,634 + -1.0
465,635 - +2.3
465,635 - +0.6
465,635 - -1.6
465,635 - +0.8
465,635 - +0.7
465,724 - Rru_A0388 0.17 +0.0
465,724 - Rru_A0388 0.17 +0.8
466,064 - Rru_A0388 0.52 +0.0
466,064 - Rru_A0388 0.52 +0.6
466,064 - Rru_A0388 0.52 +0.0
466,267 + Rru_A0388 0.73 +0.0
466,267 + Rru_A0388 0.73 +0.0
466,268 - Rru_A0388 0.73 +1.2
466,268 - Rru_A0388 0.73 +0.0
466,268 - Rru_A0388 0.73 +0.9
466,318 + Rru_A0388 0.79 +1.2
466,319 - Rru_A0388 0.79 +1.5

Or see this region's nucleotide sequence