Experiment: Succinic Acid; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0362 and Rru_A0363 are separated by 26 nucleotides Rru_A0363 and Rru_A0364 are separated by 13 nucleotides Rru_A0364 and Rru_A0365 are separated by 361 nucleotides
Rru_A0362: Rru_A0362 - Cytochrome c1 (NCBI), at 436,521 to 437,339
_A0362
Rru_A0363: Rru_A0363 - Cytochrome b/b6-like (NCBI), at 437,366 to 438,583
_A0363
Rru_A0364: Rru_A0364 - ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI), at 438,597 to 439,148
_A0364
Rru_A0365: Rru_A0365 - tRNA/rRNA methyltransferase (SpoU) (NCBI), at 439,510 to 439,992
_A0365
Position (kb) 437
438
439 Strain fitness (log2 ratio) -1
0
1 at 436.389 kb on + strand at 436.389 kb on + strand at 436.390 kb on - strand at 436.522 kb on + strand at 436.886 kb on - strand, within Rru_A0362 at 439.226 kb on - strand at 439.247 kb on - strand at 439.322 kb on - strand at 439.428 kb on + strand at 439.429 kb on - strand at 439.431 kb on - strand at 439.431 kb on - strand at 439.431 kb on - strand at 439.431 kb on - strand at 439.520 kb on + strand at 439.520 kb on + strand at 439.528 kb on + strand at 439.529 kb on - strand at 439.529 kb on - strand at 439.562 kb on + strand, within Rru_A0365 at 439.562 kb on + strand, within Rru_A0365 at 439.562 kb on + strand, within Rru_A0365 at 439.563 kb on - strand, within Rru_A0365 at 439.563 kb on - strand, within Rru_A0365 at 439.566 kb on - strand, within Rru_A0365
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM remove 436,389 + -0.0 436,389 + -0.0 436,390 - -0.0 436,522 + -0.0 436,886 - Rru_A0362 0.45 -0.0 439,226 - +0.0 439,247 - +1.1 439,322 - +0.0 439,428 + +0.0 439,429 - +0.8 439,431 - +1.1 439,431 - +0.6 439,431 - +0.0 439,431 - +0.3 439,520 + +0.0 439,520 + +0.0 439,528 + +0.0 439,529 - +0.0 439,529 - +0.4 439,562 + Rru_A0365 0.11 +0.0 439,562 + Rru_A0365 0.11 +0.0 439,562 + Rru_A0365 0.11 +0.2 439,563 - Rru_A0365 0.11 +0.9 439,563 - Rru_A0365 0.11 +0.0 439,566 - Rru_A0365 0.12 +0.0
Or see this region's nucleotide sequence