Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0258

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0257 and Rru_A0258 overlap by 4 nucleotidesRru_A0258 and Rru_A0259 are separated by 109 nucleotides Rru_A0257: Rru_A0257 - Protein of unknown function DUF898 (NCBI), at 318,316 to 319,392 _A0257 Rru_A0258: Rru_A0258 - Peptidase M48, Ste24p (NCBI), at 319,389 to 320,447 _A0258 Rru_A0259: Rru_A0259 - Carbon starvation protein CstA (NCBI), at 320,557 to 322,602 _A0259 Position (kb) 319 320 321Strain fitness (log2 ratio) -2 -1 0 1 2at 318.404 kb on - strandat 318.490 kb on + strand, within Rru_A0257at 318.490 kb on + strand, within Rru_A0257at 318.490 kb on + strand, within Rru_A0257at 318.554 kb on + strand, within Rru_A0257at 318.595 kb on + strand, within Rru_A0257at 318.596 kb on - strand, within Rru_A0257at 318.596 kb on - strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.650 kb on - strand, within Rru_A0257at 318.907 kb on + strand, within Rru_A0257at 318.907 kb on + strand, within Rru_A0257at 318.908 kb on - strand, within Rru_A0257at 318.908 kb on - strand, within Rru_A0257at 319.090 kb on + strand, within Rru_A0257at 319.091 kb on - strand, within Rru_A0257at 319.264 kb on + strand, within Rru_A0257at 319.264 kb on + strand, within Rru_A0257at 319.265 kb on - strand, within Rru_A0257at 320.220 kb on + strand, within Rru_A0258at 320.250 kb on - strand, within Rru_A0258at 320.250 kb on - strand, within Rru_A0258at 320.280 kb on + strand, within Rru_A0258at 320.280 kb on + strand, within Rru_A0258at 320.281 kb on - strand, within Rru_A0258at 320.281 kb on - strand, within Rru_A0258at 320.281 kb on - strand, within Rru_A0258at 320.430 kb on - strandat 320.474 kb on + strandat 320.668 kb on - strandat 320.668 kb on - strandat 320.668 kb on - strandat 320.672 kb on - strandat 320.672 kb on - strandat 320.776 kb on + strand, within Rru_A0259at 320.777 kb on - strand, within Rru_A0259at 320.777 kb on - strand, within Rru_A0259at 320.777 kb on - strand, within Rru_A0259at 320.794 kb on + strand, within Rru_A0259at 320.795 kb on - strand, within Rru_A0259at 320.795 kb on - strand, within Rru_A0259at 320.795 kb on - strand, within Rru_A0259at 320.795 kb on - strand, within Rru_A0259at 320.875 kb on + strand, within Rru_A0259at 320.875 kb on + strand, within Rru_A0259at 320.875 kb on + strand, within Rru_A0259at 320.875 kb on + strand, within Rru_A0259at 320.876 kb on - strand, within Rru_A0259at 320.876 kb on - strand, within Rru_A0259at 320.877 kb on + strand, within Rru_A0259at 320.877 kb on + strand, within Rru_A0259at 320.878 kb on - strand, within Rru_A0259at 320.878 kb on - strand, within Rru_A0259at 320.878 kb on - strand, within Rru_A0259at 321.135 kb on + strand, within Rru_A0259at 321.135 kb on + strand, within Rru_A0259at 321.135 kb on + strand, within Rru_A0259at 321.135 kb on + strand, within Rru_A0259at 321.136 kb on - strand, within Rru_A0259at 321.136 kb on - strand, within Rru_A0259at 321.164 kb on - strand, within Rru_A0259at 321.241 kb on + strand, within Rru_A0259at 321.242 kb on - strand, within Rru_A0259at 321.289 kb on + strand, within Rru_A0259at 321.289 kb on + strand, within Rru_A0259at 321.289 kb on + strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.291 kb on + strand, within Rru_A0259at 321.292 kb on - strand, within Rru_A0259at 321.380 kb on - strand, within Rru_A0259at 321.380 kb on - strand, within Rru_A0259at 321.380 kb on - strand, within Rru_A0259at 321.380 kb on - strand, within Rru_A0259

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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318,404 - +1.5
318,490 + Rru_A0257 0.16 +1.0
318,490 + Rru_A0257 0.16 +0.2
318,490 + Rru_A0257 0.16 +0.9
318,554 + Rru_A0257 0.22 +2.0
318,595 + Rru_A0257 0.26 +0.8
318,596 - Rru_A0257 0.26 +0.0
318,596 - Rru_A0257 0.26 +0.9
318,649 + Rru_A0257 0.31 +0.0
318,649 + Rru_A0257 0.31 +0.0
318,649 + Rru_A0257 0.31 +0.0
318,649 + Rru_A0257 0.31 +0.0
318,650 - Rru_A0257 0.31 -1.5
318,907 + Rru_A0257 0.55 +0.0
318,907 + Rru_A0257 0.55 +0.0
318,908 - Rru_A0257 0.55 +0.0
318,908 - Rru_A0257 0.55 +0.7
319,090 + Rru_A0257 0.72 +0.0
319,091 - Rru_A0257 0.72 +1.3
319,264 + Rru_A0257 0.88 +1.0
319,264 + Rru_A0257 0.88 +1.0
319,265 - Rru_A0257 0.88 +1.1
320,220 + Rru_A0258 0.78 +1.5
320,250 - Rru_A0258 0.81 +0.0
320,250 - Rru_A0258 0.81 +0.0
320,280 + Rru_A0258 0.84 +0.0
320,280 + Rru_A0258 0.84 +2.0
320,281 - Rru_A0258 0.84 +0.0
320,281 - Rru_A0258 0.84 -0.7
320,281 - Rru_A0258 0.84 +0.0
320,430 - +0.0
320,474 + +0.0
320,668 - +0.0
320,668 - +0.0
320,668 - +0.3
320,672 - +0.0
320,672 - +0.0
320,776 + Rru_A0259 0.11 +0.5
320,777 - Rru_A0259 0.11 +0.0
320,777 - Rru_A0259 0.11 +0.0
320,777 - Rru_A0259 0.11 +0.0
320,794 + Rru_A0259 0.12 +0.0
320,795 - Rru_A0259 0.12 +2.4
320,795 - Rru_A0259 0.12 +0.0
320,795 - Rru_A0259 0.12 +2.6
320,795 - Rru_A0259 0.12 +1.0
320,875 + Rru_A0259 0.16 -0.2
320,875 + Rru_A0259 0.16 +1.0
320,875 + Rru_A0259 0.16 -1.0
320,875 + Rru_A0259 0.16 +0.0
320,876 - Rru_A0259 0.16 -1.3
320,876 - Rru_A0259 0.16 -0.7
320,877 + Rru_A0259 0.16 +0.0
320,877 + Rru_A0259 0.16 +0.0
320,878 - Rru_A0259 0.16 +0.0
320,878 - Rru_A0259 0.16 -0.4
320,878 - Rru_A0259 0.16 +0.1
321,135 + Rru_A0259 0.28 +0.0
321,135 + Rru_A0259 0.28 +0.0
321,135 + Rru_A0259 0.28 +0.0
321,135 + Rru_A0259 0.28 +0.4
321,136 - Rru_A0259 0.28 +1.5
321,136 - Rru_A0259 0.28 +0.0
321,164 - Rru_A0259 0.30 +0.0
321,241 + Rru_A0259 0.33 +0.0
321,242 - Rru_A0259 0.33 +0.9
321,289 + Rru_A0259 0.36 +0.0
321,289 + Rru_A0259 0.36 -1.0
321,289 + Rru_A0259 0.36 +0.0
321,290 - Rru_A0259 0.36 +0.0
321,290 - Rru_A0259 0.36 +0.0
321,290 - Rru_A0259 0.36 +0.0
321,290 - Rru_A0259 0.36 -2.0
321,290 - Rru_A0259 0.36 +0.0
321,290 - Rru_A0259 0.36 -1.0
321,291 + Rru_A0259 0.36 -1.4
321,292 - Rru_A0259 0.36 +0.0
321,380 - Rru_A0259 0.40 -0.2
321,380 - Rru_A0259 0.40 +0.0
321,380 - Rru_A0259 0.40 +0.0
321,380 - Rru_A0259 0.40 -0.8

Or see this region's nucleotide sequence