Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30130 and AO356_30135 are separated by 18 nucleotides AO356_30135 and AO356_30140 are separated by 36 nucleotides
AO356_30130: AO356_30130 - pyridine nucleotide-disulfide oxidoreductase, at 7,032,144 to 7,033,376
_30130
AO356_30135: AO356_30135 - Rieske family ferredoxin, at 7,033,395 to 7,033,715
_30135
AO356_30140: AO356_30140 - fatty acid desaturase, at 7,033,752 to 7,034,840
_30140
Position (kb) 7033
7034 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 7032.401 kb on - strand, within AO356_30130 at 7032.401 kb on - strand, within AO356_30130 at 7032.741 kb on + strand, within AO356_30130 at 7032.741 kb on + strand, within AO356_30130 at 7032.757 kb on - strand, within AO356_30130 at 7032.828 kb on + strand, within AO356_30130 at 7032.828 kb on + strand, within AO356_30130 at 7032.997 kb on + strand, within AO356_30130 at 7032.998 kb on - strand, within AO356_30130 at 7033.065 kb on + strand, within AO356_30130 at 7033.066 kb on - strand, within AO356_30130 at 7033.066 kb on - strand, within AO356_30130 at 7033.299 kb on - strand at 7033.301 kb on - strand at 7033.444 kb on + strand, within AO356_30135 at 7033.444 kb on + strand, within AO356_30135 at 7033.577 kb on + strand, within AO356_30135 at 7033.630 kb on + strand, within AO356_30135 at 7033.630 kb on + strand, within AO356_30135 at 7033.630 kb on + strand, within AO356_30135 at 7033.630 kb on + strand, within AO356_30135 at 7033.630 kb on + strand, within AO356_30135 at 7033.630 kb on + strand, within AO356_30135 at 7033.631 kb on - strand, within AO356_30135 at 7033.631 kb on - strand, within AO356_30135 at 7033.631 kb on - strand, within AO356_30135 at 7033.631 kb on - strand, within AO356_30135 at 7033.634 kb on + strand, within AO356_30135 at 7033.634 kb on + strand, within AO356_30135 at 7033.634 kb on + strand, within AO356_30135 at 7033.635 kb on - strand, within AO356_30135 at 7033.675 kb on - strand, within AO356_30135 at 7033.692 kb on + strand at 7033.692 kb on + strand at 7033.692 kb on + strand at 7033.693 kb on - strand at 7033.828 kb on + strand at 7033.828 kb on + strand at 7033.898 kb on - strand, within AO356_30140 at 7033.951 kb on + strand, within AO356_30140 at 7034.003 kb on - strand, within AO356_30140 at 7034.003 kb on - strand, within AO356_30140 at 7034.027 kb on + strand, within AO356_30140 at 7034.028 kb on - strand, within AO356_30140 at 7034.029 kb on + strand, within AO356_30140 at 7034.029 kb on + strand, within AO356_30140 at 7034.029 kb on + strand, within AO356_30140 at 7034.029 kb on + strand, within AO356_30140 at 7034.029 kb on + strand, within AO356_30140 at 7034.029 kb on + strand, within AO356_30140 at 7034.030 kb on - strand, within AO356_30140 at 7034.030 kb on - strand, within AO356_30140 at 7034.030 kb on - strand, within AO356_30140 at 7034.030 kb on - strand, within AO356_30140 at 7034.030 kb on - strand, within AO356_30140 at 7034.030 kb on - strand, within AO356_30140 at 7034.049 kb on - strand, within AO356_30140 at 7034.049 kb on - strand, within AO356_30140 at 7034.079 kb on + strand, within AO356_30140 at 7034.079 kb on + strand, within AO356_30140 at 7034.079 kb on + strand, within AO356_30140 at 7034.080 kb on - strand, within AO356_30140 at 7034.080 kb on - strand, within AO356_30140 at 7034.080 kb on - strand, within AO356_30140 at 7034.104 kb on + strand, within AO356_30140 at 7034.105 kb on - strand, within AO356_30140 at 7034.122 kb on + strand, within AO356_30140 at 7034.143 kb on + strand, within AO356_30140 at 7034.143 kb on + strand, within AO356_30140 at 7034.143 kb on + strand, within AO356_30140 at 7034.143 kb on + strand, within AO356_30140 at 7034.143 kb on + strand, within AO356_30140 at 7034.143 kb on + strand, within AO356_30140 at 7034.144 kb on - strand, within AO356_30140 at 7034.197 kb on + strand, within AO356_30140 at 7034.301 kb on + strand, within AO356_30140 at 7034.302 kb on - strand, within AO356_30140 at 7034.569 kb on + strand, within AO356_30140 at 7034.581 kb on + strand, within AO356_30140 at 7034.582 kb on - strand, within AO356_30140
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 7,032,401 - AO356_30130 0.21 -0.1 7,032,401 - AO356_30130 0.21 -2.7 7,032,741 + AO356_30130 0.48 +1.6 7,032,741 + AO356_30130 0.48 -2.1 7,032,757 - AO356_30130 0.50 -1.7 7,032,828 + AO356_30130 0.55 -0.3 7,032,828 + AO356_30130 0.55 -0.7 7,032,997 + AO356_30130 0.69 +1.9 7,032,998 - AO356_30130 0.69 +0.7 7,033,065 + AO356_30130 0.75 +1.2 7,033,066 - AO356_30130 0.75 -0.3 7,033,066 - AO356_30130 0.75 -0.5 7,033,299 - -0.3 7,033,301 - +1.6 7,033,444 + AO356_30135 0.15 -0.2 7,033,444 + AO356_30135 0.15 -0.9 7,033,577 + AO356_30135 0.57 -0.6 7,033,630 + AO356_30135 0.73 +1.3 7,033,630 + AO356_30135 0.73 +0.6 7,033,630 + AO356_30135 0.73 -2.8 7,033,630 + AO356_30135 0.73 +0.6 7,033,630 + AO356_30135 0.73 +1.7 7,033,630 + AO356_30135 0.73 +1.1 7,033,631 - AO356_30135 0.74 +0.7 7,033,631 - AO356_30135 0.74 +0.0 7,033,631 - AO356_30135 0.74 -2.2 7,033,631 - AO356_30135 0.74 -0.8 7,033,634 + AO356_30135 0.74 +0.8 7,033,634 + AO356_30135 0.74 -0.6 7,033,634 + AO356_30135 0.74 +1.4 7,033,635 - AO356_30135 0.75 -1.2 7,033,675 - AO356_30135 0.87 +1.5 7,033,692 + +0.5 7,033,692 + -0.4 7,033,692 + -0.5 7,033,693 - +0.8 7,033,828 + +0.6 7,033,828 + +1.8 7,033,898 - AO356_30140 0.13 +0.5 7,033,951 + AO356_30140 0.18 +0.2 7,034,003 - AO356_30140 0.23 +0.8 7,034,003 - AO356_30140 0.23 +0.0 7,034,027 + AO356_30140 0.25 +0.8 7,034,028 - AO356_30140 0.25 +0.7 7,034,029 + AO356_30140 0.25 +0.2 7,034,029 + AO356_30140 0.25 -0.7 7,034,029 + AO356_30140 0.25 +0.7 7,034,029 + AO356_30140 0.25 -0.0 7,034,029 + AO356_30140 0.25 -1.5 7,034,029 + AO356_30140 0.25 -0.4 7,034,030 - AO356_30140 0.26 -0.4 7,034,030 - AO356_30140 0.26 +0.6 7,034,030 - AO356_30140 0.26 +0.5 7,034,030 - AO356_30140 0.26 +0.5 7,034,030 - AO356_30140 0.26 +0.2 7,034,030 - AO356_30140 0.26 +1.1 7,034,049 - AO356_30140 0.27 -0.4 7,034,049 - AO356_30140 0.27 -2.5 7,034,079 + AO356_30140 0.30 -1.8 7,034,079 + AO356_30140 0.30 +1.0 7,034,079 + AO356_30140 0.30 -1.7 7,034,080 - AO356_30140 0.30 -0.9 7,034,080 - AO356_30140 0.30 -0.5 7,034,080 - AO356_30140 0.30 -0.2 7,034,104 + AO356_30140 0.32 +1.1 7,034,105 - AO356_30140 0.32 +0.0 7,034,122 + AO356_30140 0.34 -0.9 7,034,143 + AO356_30140 0.36 -1.4 7,034,143 + AO356_30140 0.36 -0.2 7,034,143 + AO356_30140 0.36 +1.2 7,034,143 + AO356_30140 0.36 +0.8 7,034,143 + AO356_30140 0.36 -1.3 7,034,143 + AO356_30140 0.36 +0.4 7,034,144 - AO356_30140 0.36 -2.1 7,034,197 + AO356_30140 0.41 -0.3 7,034,301 + AO356_30140 0.50 +0.8 7,034,302 - AO356_30140 0.51 +0.3 7,034,569 + AO356_30140 0.75 +0.9 7,034,581 + AO356_30140 0.76 -1.7 7,034,582 - AO356_30140 0.76 +0.7
Or see this region's nucleotide sequence