Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24810 and AO356_24815 are separated by 196 nucleotides AO356_24815 and AO356_24820 are separated by 340 nucleotides AO356_24820 and AO356_24825 are separated by 129 nucleotides
AO356_24810: AO356_24810 - hemagglutinin, at 5,611,038 to 5,623,655
_24810
AO356_24815: AO356_24815 - diguanylate cyclase, at 5,623,852 to 5,626,425
_24815
AO356_24820: AO356_24820 - calcium-binding protein, at 5,626,766 to 5,627,152
_24820
AO356_24825: AO356_24825 - hypothetical protein, at 5,627,282 to 5,628,127
_24825
Position (kb) 5623
5624
5625
5626
5627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5622.966 kb on + strand at 5622.966 kb on + strand at 5622.966 kb on + strand at 5623.089 kb on + strand at 5623.111 kb on - strand at 5623.554 kb on + strand at 5623.555 kb on - strand at 5623.653 kb on + strand at 5623.774 kb on + strand at 5623.774 kb on + strand at 5623.916 kb on + strand at 5623.998 kb on + strand at 5623.999 kb on - strand at 5624.643 kb on - strand, within AO356_24815 at 5624.681 kb on + strand, within AO356_24815 at 5624.681 kb on + strand, within AO356_24815 at 5624.681 kb on + strand, within AO356_24815 at 5624.682 kb on - strand, within AO356_24815 at 5624.682 kb on - strand, within AO356_24815 at 5624.682 kb on - strand, within AO356_24815 at 5624.682 kb on - strand, within AO356_24815 at 5624.958 kb on + strand, within AO356_24815 at 5625.417 kb on - strand, within AO356_24815 at 5625.417 kb on - strand, within AO356_24815 at 5625.996 kb on + strand, within AO356_24815 at 5626.094 kb on + strand, within AO356_24815 at 5626.095 kb on - strand, within AO356_24815 at 5626.124 kb on + strand, within AO356_24815 at 5626.124 kb on + strand, within AO356_24815 at 5626.426 kb on - strand at 5626.431 kb on + strand at 5626.431 kb on + strand at 5626.432 kb on - strand at 5626.432 kb on - strand at 5626.432 kb on - strand at 5626.493 kb on + strand at 5626.597 kb on + strand at 5626.598 kb on - strand at 5626.601 kb on + strand at 5626.602 kb on - strand at 5626.602 kb on - strand at 5626.602 kb on - strand at 5626.602 kb on - strand at 5626.687 kb on + strand at 5626.688 kb on - strand at 5626.691 kb on + strand at 5626.692 kb on - strand at 5626.738 kb on + strand at 5626.739 kb on - strand at 5626.761 kb on - strand at 5626.761 kb on - strand at 5626.877 kb on + strand, within AO356_24820 at 5627.078 kb on + strand, within AO356_24820 at 5627.079 kb on - strand, within AO356_24820 at 5627.079 kb on - strand, within AO356_24820
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 5,622,966 + -2.2 5,622,966 + +0.9 5,622,966 + -0.9 5,623,089 + -0.9 5,623,111 - -1.7 5,623,554 + -1.1 5,623,555 - +0.1 5,623,653 + -0.9 5,623,774 + -0.6 5,623,774 + +2.4 5,623,916 + -1.4 5,623,998 + +1.9 5,623,999 - -1.4 5,624,643 - AO356_24815 0.31 -0.0 5,624,681 + AO356_24815 0.32 -1.9 5,624,681 + AO356_24815 0.32 -1.6 5,624,681 + AO356_24815 0.32 -1.5 5,624,682 - AO356_24815 0.32 +1.9 5,624,682 - AO356_24815 0.32 +0.1 5,624,682 - AO356_24815 0.32 +1.5 5,624,682 - AO356_24815 0.32 -0.2 5,624,958 + AO356_24815 0.43 +1.8 5,625,417 - AO356_24815 0.61 -1.1 5,625,417 - AO356_24815 0.61 +1.7 5,625,996 + AO356_24815 0.83 +0.5 5,626,094 + AO356_24815 0.87 -3.1 5,626,095 - AO356_24815 0.87 +1.9 5,626,124 + AO356_24815 0.88 -2.0 5,626,124 + AO356_24815 0.88 -0.5 5,626,426 - -1.4 5,626,431 + -0.7 5,626,431 + +1.6 5,626,432 - +1.3 5,626,432 - -0.6 5,626,432 - -1.9 5,626,493 + -0.3 5,626,597 + -0.5 5,626,598 - -1.2 5,626,601 + +0.5 5,626,602 - -0.8 5,626,602 - -1.4 5,626,602 - -0.6 5,626,602 - -0.5 5,626,687 + -0.4 5,626,688 - -2.1 5,626,691 + -1.9 5,626,692 - -1.5 5,626,738 + +1.8 5,626,739 - +0.9 5,626,761 - +1.4 5,626,761 - +1.9 5,626,877 + AO356_24820 0.29 +0.2 5,627,078 + AO356_24820 0.81 -1.4 5,627,079 - AO356_24820 0.81 +1.6 5,627,079 - AO356_24820 0.81 -1.6
Or see this region's nucleotide sequence