Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24155 and AO356_24160 are separated by 308 nucleotides AO356_24160 and AO356_24165 overlap by 7 nucleotides AO356_24165 and AO356_24170 overlap by 4 nucleotides
AO356_24155: AO356_24155 - LysR family transcriptional regulator, at 5,416,538 to 5,417,431
_24155
AO356_24160: AO356_24160 - formate dehydrogenase, at 5,417,740 to 5,418,222
_24160
AO356_24165: AO356_24165 - formate dehydrogenase, at 5,418,216 to 5,419,775
_24165
AO356_24170: AO356_24170 - formate dehydrogenase, at 5,419,772 to 5,422,648
_24170
Position (kb) 5418
5419
5420 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5417.264 kb on + strand, within AO356_24155 at 5417.265 kb on - strand, within AO356_24155 at 5417.265 kb on - strand, within AO356_24155 at 5417.354 kb on + strand at 5417.360 kb on + strand at 5417.360 kb on + strand at 5417.361 kb on - strand at 5417.361 kb on - strand at 5417.363 kb on + strand at 5417.364 kb on - strand at 5417.451 kb on + strand at 5417.472 kb on + strand at 5417.472 kb on + strand at 5417.473 kb on - strand at 5417.473 kb on - strand at 5417.474 kb on + strand at 5417.474 kb on + strand at 5417.474 kb on + strand at 5417.475 kb on - strand at 5417.475 kb on - strand at 5417.475 kb on - strand at 5417.475 kb on - strand at 5417.475 kb on - strand at 5417.475 kb on - strand at 5417.475 kb on - strand at 5417.475 kb on - strand at 5417.733 kb on + strand at 5417.734 kb on - strand at 5417.734 kb on - strand at 5417.739 kb on + strand at 5417.740 kb on - strand at 5417.740 kb on - strand at 5417.821 kb on - strand, within AO356_24160 at 5417.851 kb on + strand, within AO356_24160 at 5417.851 kb on + strand, within AO356_24160 at 5417.851 kb on + strand, within AO356_24160 at 5417.851 kb on + strand, within AO356_24160 at 5417.852 kb on - strand, within AO356_24160 at 5417.932 kb on + strand, within AO356_24160 at 5417.933 kb on - strand, within AO356_24160 at 5417.968 kb on - strand, within AO356_24160 at 5418.230 kb on + strand at 5418.231 kb on - strand at 5418.738 kb on + strand, within AO356_24165 at 5418.738 kb on + strand, within AO356_24165 at 5418.739 kb on - strand, within AO356_24165 at 5418.788 kb on + strand, within AO356_24165 at 5418.788 kb on + strand, within AO356_24165 at 5418.788 kb on + strand, within AO356_24165 at 5418.788 kb on + strand, within AO356_24165 at 5418.788 kb on + strand, within AO356_24165 at 5418.789 kb on - strand, within AO356_24165 at 5418.789 kb on - strand, within AO356_24165 at 5418.789 kb on - strand, within AO356_24165 at 5418.789 kb on - strand, within AO356_24165 at 5418.867 kb on + strand, within AO356_24165 at 5418.867 kb on + strand, within AO356_24165 at 5418.867 kb on + strand, within AO356_24165 at 5418.868 kb on - strand, within AO356_24165 at 5418.868 kb on - strand, within AO356_24165 at 5418.868 kb on - strand, within AO356_24165 at 5418.868 kb on - strand, within AO356_24165 at 5418.868 kb on - strand, within AO356_24165 at 5418.869 kb on + strand, within AO356_24165 at 5418.869 kb on + strand, within AO356_24165 at 5418.870 kb on - strand, within AO356_24165 at 5418.870 kb on - strand, within AO356_24165 at 5418.870 kb on - strand, within AO356_24165 at 5418.870 kb on - strand, within AO356_24165 at 5418.870 kb on - strand, within AO356_24165 at 5418.870 kb on - strand, within AO356_24165 at 5418.873 kb on + strand, within AO356_24165 at 5418.873 kb on + strand, within AO356_24165 at 5418.873 kb on + strand, within AO356_24165 at 5418.873 kb on + strand, within AO356_24165 at 5418.873 kb on + strand, within AO356_24165 at 5418.874 kb on - strand, within AO356_24165 at 5418.874 kb on - strand, within AO356_24165 at 5418.874 kb on - strand, within AO356_24165 at 5418.874 kb on - strand, within AO356_24165 at 5418.874 kb on - strand, within AO356_24165 at 5418.906 kb on - strand, within AO356_24165 at 5419.014 kb on + strand, within AO356_24165 at 5419.014 kb on + strand, within AO356_24165 at 5419.014 kb on + strand, within AO356_24165 at 5419.014 kb on + strand, within AO356_24165 at 5419.014 kb on + strand, within AO356_24165 at 5419.014 kb on + strand, within AO356_24165 at 5419.014 kb on + strand, within AO356_24165 at 5419.014 kb on + strand, within AO356_24165 at 5419.015 kb on - strand, within AO356_24165 at 5419.015 kb on - strand, within AO356_24165 at 5419.015 kb on - strand, within AO356_24165 at 5419.015 kb on - strand, within AO356_24165 at 5419.016 kb on + strand, within AO356_24165 at 5419.016 kb on + strand, within AO356_24165 at 5419.017 kb on - strand, within AO356_24165 at 5419.017 kb on - strand, within AO356_24165 at 5419.017 kb on - strand, within AO356_24165 at 5419.017 kb on - strand, within AO356_24165 at 5419.134 kb on - strand, within AO356_24165 at 5419.134 kb on - strand, within AO356_24165 at 5419.188 kb on + strand, within AO356_24165 at 5419.311 kb on + strand, within AO356_24165 at 5419.669 kb on - strand at 5419.777 kb on + strand at 5420.105 kb on + strand, within AO356_24170 at 5420.105 kb on + strand, within AO356_24170 at 5420.105 kb on + strand, within AO356_24170 at 5420.105 kb on + strand, within AO356_24170 at 5420.106 kb on - strand, within AO356_24170 at 5420.106 kb on - strand, within AO356_24170 at 5420.205 kb on - strand, within AO356_24170 at 5420.210 kb on + strand, within AO356_24170 at 5420.210 kb on + strand, within AO356_24170 at 5420.267 kb on + strand, within AO356_24170 at 5420.433 kb on + strand, within AO356_24170 at 5420.433 kb on + strand, within AO356_24170 at 5420.520 kb on - strand, within AO356_24170 at 5420.738 kb on + strand, within AO356_24170 at 5420.774 kb on + strand, within AO356_24170
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 5,417,264 + AO356_24155 0.81 -1.8 5,417,265 - AO356_24155 0.81 +0.2 5,417,265 - AO356_24155 0.81 -0.4 5,417,354 + -1.8 5,417,360 + +1.7 5,417,360 + +0.3 5,417,361 - +0.9 5,417,361 - +0.3 5,417,363 + -0.9 5,417,364 - -0.2 5,417,451 + +1.0 5,417,472 + -0.1 5,417,472 + -1.1 5,417,473 - -0.5 5,417,473 - +0.9 5,417,474 + -1.8 5,417,474 + -0.5 5,417,474 + +0.0 5,417,475 - -1.5 5,417,475 - -1.2 5,417,475 - +0.3 5,417,475 - +1.2 5,417,475 - -0.7 5,417,475 - +1.5 5,417,475 - -0.1 5,417,475 - +1.9 5,417,733 + +1.3 5,417,734 - +0.1 5,417,734 - +0.4 5,417,739 + -2.6 5,417,740 - -0.9 5,417,740 - -2.1 5,417,821 - AO356_24160 0.17 +0.4 5,417,851 + AO356_24160 0.23 +0.7 5,417,851 + AO356_24160 0.23 +0.7 5,417,851 + AO356_24160 0.23 -0.3 5,417,851 + AO356_24160 0.23 -2.1 5,417,852 - AO356_24160 0.23 -0.5 5,417,932 + AO356_24160 0.40 +0.4 5,417,933 - AO356_24160 0.40 +0.5 5,417,968 - AO356_24160 0.47 +0.0 5,418,230 + -1.1 5,418,231 - +1.2 5,418,738 + AO356_24165 0.33 +0.4 5,418,738 + AO356_24165 0.33 +1.7 5,418,739 - AO356_24165 0.34 +0.6 5,418,788 + AO356_24165 0.37 +1.0 5,418,788 + AO356_24165 0.37 +0.1 5,418,788 + AO356_24165 0.37 -0.3 5,418,788 + AO356_24165 0.37 -1.2 5,418,788 + AO356_24165 0.37 +1.4 5,418,789 - AO356_24165 0.37 +1.2 5,418,789 - AO356_24165 0.37 -1.0 5,418,789 - AO356_24165 0.37 -0.6 5,418,789 - AO356_24165 0.37 +2.1 5,418,867 + AO356_24165 0.42 +2.5 5,418,867 + AO356_24165 0.42 +1.6 5,418,867 + AO356_24165 0.42 -0.3 5,418,868 - AO356_24165 0.42 +0.9 5,418,868 - AO356_24165 0.42 +0.5 5,418,868 - AO356_24165 0.42 -1.5 5,418,868 - AO356_24165 0.42 -0.6 5,418,868 - AO356_24165 0.42 -0.2 5,418,869 + AO356_24165 0.42 +0.5 5,418,869 + AO356_24165 0.42 +1.0 5,418,870 - AO356_24165 0.42 +0.1 5,418,870 - AO356_24165 0.42 -1.2 5,418,870 - AO356_24165 0.42 -2.6 5,418,870 - AO356_24165 0.42 -1.1 5,418,870 - AO356_24165 0.42 +1.8 5,418,870 - AO356_24165 0.42 -0.1 5,418,873 + AO356_24165 0.42 +0.9 5,418,873 + AO356_24165 0.42 -1.3 5,418,873 + AO356_24165 0.42 -0.2 5,418,873 + AO356_24165 0.42 +0.4 5,418,873 + AO356_24165 0.42 +0.5 5,418,874 - AO356_24165 0.42 -0.4 5,418,874 - AO356_24165 0.42 -0.0 5,418,874 - AO356_24165 0.42 +1.6 5,418,874 - AO356_24165 0.42 +3.0 5,418,874 - AO356_24165 0.42 -1.1 5,418,906 - AO356_24165 0.44 +0.1 5,419,014 + AO356_24165 0.51 -2.5 5,419,014 + AO356_24165 0.51 -0.8 5,419,014 + AO356_24165 0.51 -0.7 5,419,014 + AO356_24165 0.51 -1.1 5,419,014 + AO356_24165 0.51 -0.7 5,419,014 + AO356_24165 0.51 -0.1 5,419,014 + AO356_24165 0.51 +0.3 5,419,014 + AO356_24165 0.51 -0.3 5,419,015 - AO356_24165 0.51 -0.3 5,419,015 - AO356_24165 0.51 +2.1 5,419,015 - AO356_24165 0.51 -0.4 5,419,015 - AO356_24165 0.51 +1.5 5,419,016 + AO356_24165 0.51 +0.1 5,419,016 + AO356_24165 0.51 -0.5 5,419,017 - AO356_24165 0.51 -0.0 5,419,017 - AO356_24165 0.51 -1.2 5,419,017 - AO356_24165 0.51 -0.2 5,419,017 - AO356_24165 0.51 -0.1 5,419,134 - AO356_24165 0.59 -0.5 5,419,134 - AO356_24165 0.59 -1.3 5,419,188 + AO356_24165 0.62 +0.0 5,419,311 + AO356_24165 0.70 +0.4 5,419,669 - +1.3 5,419,777 + +2.4 5,420,105 + AO356_24170 0.12 -0.5 5,420,105 + AO356_24170 0.12 +0.8 5,420,105 + AO356_24170 0.12 -0.2 5,420,105 + AO356_24170 0.12 +1.7 5,420,106 - AO356_24170 0.12 -1.8 5,420,106 - AO356_24170 0.12 +1.6 5,420,205 - AO356_24170 0.15 -0.5 5,420,210 + AO356_24170 0.15 +0.9 5,420,210 + AO356_24170 0.15 -0.3 5,420,267 + AO356_24170 0.17 -0.8 5,420,433 + AO356_24170 0.23 +0.6 5,420,433 + AO356_24170 0.23 -1.6 5,420,520 - AO356_24170 0.26 +1.0 5,420,738 + AO356_24170 0.34 +0.9 5,420,774 + AO356_24170 0.35 -2.6
Or see this region's nucleotide sequence