Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23950

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23940 and AO356_23945 are separated by 135 nucleotidesAO356_23945 and AO356_23950 are separated by 78 nucleotidesAO356_23950 and AO356_23955 are separated by 308 nucleotides AO356_23940: AO356_23940 - Crp/Fnr family transcriptional regulator, at 5,368,464 to 5,369,216 _23940 AO356_23945: AO356_23945 - hypothetical protein, at 5,369,352 to 5,369,600 _23945 AO356_23950: AO356_23950 - hypothetical protein, at 5,369,679 to 5,371,022 _23950 AO356_23955: AO356_23955 - GntR family transcriptional regulator, at 5,371,331 to 5,372,062 _23955 Position (kb) 5369 5370 5371 5372Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5368.679 kb on + strand, within AO356_23940at 5368.679 kb on + strand, within AO356_23940at 5368.679 kb on + strand, within AO356_23940at 5368.679 kb on + strand, within AO356_23940at 5368.680 kb on - strand, within AO356_23940at 5368.680 kb on - strand, within AO356_23940at 5368.702 kb on - strand, within AO356_23940at 5368.889 kb on + strand, within AO356_23940at 5368.890 kb on - strand, within AO356_23940at 5368.897 kb on + strand, within AO356_23940at 5368.898 kb on - strand, within AO356_23940at 5369.018 kb on - strand, within AO356_23940at 5369.048 kb on - strand, within AO356_23940at 5369.230 kb on - strandat 5369.231 kb on + strandat 5369.231 kb on + strandat 5369.232 kb on - strandat 5369.232 kb on - strandat 5369.246 kb on + strandat 5369.246 kb on + strandat 5369.246 kb on + strandat 5369.246 kb on + strandat 5369.246 kb on + strandat 5369.247 kb on - strandat 5369.247 kb on - strandat 5369.387 kb on - strand, within AO356_23945at 5369.387 kb on - strand, within AO356_23945at 5369.598 kb on + strandat 5369.598 kb on + strandat 5369.599 kb on - strandat 5369.610 kb on - strandat 5369.610 kb on - strandat 5369.610 kb on - strandat 5369.610 kb on - strandat 5369.610 kb on - strandat 5369.611 kb on + strandat 5369.611 kb on + strandat 5369.611 kb on + strandat 5369.611 kb on + strandat 5369.612 kb on - strandat 5369.612 kb on - strandat 5369.612 kb on - strandat 5369.612 kb on - strandat 5369.612 kb on - strandat 5369.704 kb on + strandat 5369.719 kb on + strandat 5369.720 kb on - strandat 5369.720 kb on - strandat 5369.821 kb on + strand, within AO356_23950at 5369.821 kb on + strand, within AO356_23950at 5369.821 kb on + strand, within AO356_23950at 5369.821 kb on + strand, within AO356_23950at 5369.821 kb on + strand, within AO356_23950at 5369.821 kb on + strand, within AO356_23950at 5369.822 kb on - strand, within AO356_23950at 5369.822 kb on - strand, within AO356_23950at 5369.822 kb on - strand, within AO356_23950at 5369.822 kb on - strand, within AO356_23950at 5369.878 kb on + strand, within AO356_23950at 5369.878 kb on + strand, within AO356_23950at 5369.878 kb on + strand, within AO356_23950at 5369.878 kb on + strand, within AO356_23950at 5369.879 kb on - strand, within AO356_23950at 5369.879 kb on - strand, within AO356_23950at 5369.908 kb on + strand, within AO356_23950at 5369.908 kb on + strand, within AO356_23950at 5369.909 kb on - strand, within AO356_23950at 5370.058 kb on + strand, within AO356_23950at 5370.058 kb on + strand, within AO356_23950at 5370.059 kb on - strand, within AO356_23950at 5370.059 kb on - strand, within AO356_23950at 5370.080 kb on - strand, within AO356_23950at 5370.133 kb on + strand, within AO356_23950at 5370.166 kb on + strand, within AO356_23950at 5370.166 kb on + strand, within AO356_23950at 5370.182 kb on + strand, within AO356_23950at 5370.183 kb on - strand, within AO356_23950at 5370.183 kb on - strand, within AO356_23950at 5370.184 kb on + strand, within AO356_23950at 5370.238 kb on + strand, within AO356_23950at 5370.238 kb on + strand, within AO356_23950at 5370.238 kb on + strand, within AO356_23950at 5370.238 kb on + strand, within AO356_23950at 5370.238 kb on + strand, within AO356_23950at 5370.239 kb on - strand, within AO356_23950at 5370.239 kb on - strand, within AO356_23950at 5370.289 kb on + strand, within AO356_23950at 5370.290 kb on - strand, within AO356_23950at 5370.292 kb on + strand, within AO356_23950at 5370.292 kb on + strand, within AO356_23950at 5370.293 kb on - strand, within AO356_23950at 5370.305 kb on + strand, within AO356_23950at 5370.325 kb on + strand, within AO356_23950at 5370.325 kb on + strand, within AO356_23950at 5370.325 kb on + strand, within AO356_23950at 5370.325 kb on + strand, within AO356_23950at 5370.326 kb on - strand, within AO356_23950at 5370.326 kb on - strand, within AO356_23950at 5370.558 kb on + strand, within AO356_23950at 5370.559 kb on - strand, within AO356_23950at 5370.640 kb on + strand, within AO356_23950at 5370.640 kb on + strand, within AO356_23950at 5370.641 kb on - strand, within AO356_23950at 5370.747 kb on + strand, within AO356_23950at 5370.747 kb on + strand, within AO356_23950at 5370.748 kb on - strand, within AO356_23950at 5370.818 kb on - strand, within AO356_23950at 5370.847 kb on + strand, within AO356_23950at 5370.848 kb on - strand, within AO356_23950at 5370.863 kb on - strand, within AO356_23950at 5371.062 kb on - strandat 5371.274 kb on + strandat 5371.275 kb on - strandat 5371.278 kb on + strandat 5371.279 kb on - strandat 5371.298 kb on - strandat 5371.324 kb on - strandat 5371.367 kb on + strandat 5371.367 kb on + strandat 5371.367 kb on + strandat 5371.367 kb on + strandat 5371.367 kb on + strandat 5371.368 kb on - strandat 5371.546 kb on + strand, within AO356_23955at 5371.847 kb on + strand, within AO356_23955at 5371.847 kb on + strand, within AO356_23955at 5371.847 kb on + strand, within AO356_23955at 5371.847 kb on + strand, within AO356_23955at 5371.847 kb on + strand, within AO356_23955at 5371.847 kb on + strand, within AO356_23955at 5371.848 kb on - strand, within AO356_23955at 5371.877 kb on + strand, within AO356_23955at 5371.877 kb on + strand, within AO356_23955at 5371.877 kb on + strand, within AO356_23955at 5371.986 kb on - strand, within AO356_23955at 5371.986 kb on - strand, within AO356_23955

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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5,368,679 + AO356_23940 0.29 -1.0
5,368,679 + AO356_23940 0.29 +0.4
5,368,679 + AO356_23940 0.29 +1.2
5,368,679 + AO356_23940 0.29 +1.0
5,368,680 - AO356_23940 0.29 +0.5
5,368,680 - AO356_23940 0.29 +0.4
5,368,702 - AO356_23940 0.32 -0.1
5,368,889 + AO356_23940 0.56 -1.4
5,368,890 - AO356_23940 0.57 +0.4
5,368,897 + AO356_23940 0.58 -1.4
5,368,898 - AO356_23940 0.58 +1.3
5,369,018 - AO356_23940 0.74 -0.9
5,369,048 - AO356_23940 0.78 +0.8
5,369,230 - +0.7
5,369,231 + -1.0
5,369,231 + +1.1
5,369,232 - +0.0
5,369,232 - +0.4
5,369,246 + +0.0
5,369,246 + +0.6
5,369,246 + -1.8
5,369,246 + -0.7
5,369,246 + +0.7
5,369,247 - +2.2
5,369,247 - -0.6
5,369,387 - AO356_23945 0.14 -0.7
5,369,387 - AO356_23945 0.14 -0.1
5,369,598 + +1.3
5,369,598 + -1.6
5,369,599 - -0.8
5,369,610 - +0.1
5,369,610 - -2.3
5,369,610 - -0.3
5,369,610 - +0.4
5,369,610 - -0.1
5,369,611 + -0.2
5,369,611 + -0.6
5,369,611 + +0.9
5,369,611 + -0.4
5,369,612 - +0.6
5,369,612 - +1.5
5,369,612 - +1.9
5,369,612 - +0.1
5,369,612 - -0.2
5,369,704 + +1.6
5,369,719 + -0.4
5,369,720 - +0.6
5,369,720 - +1.2
5,369,821 + AO356_23950 0.11 +0.5
5,369,821 + AO356_23950 0.11 +1.2
5,369,821 + AO356_23950 0.11 -0.7
5,369,821 + AO356_23950 0.11 +1.0
5,369,821 + AO356_23950 0.11 -2.3
5,369,821 + AO356_23950 0.11 +1.3
5,369,822 - AO356_23950 0.11 -1.6
5,369,822 - AO356_23950 0.11 +0.9
5,369,822 - AO356_23950 0.11 +0.4
5,369,822 - AO356_23950 0.11 -3.3
5,369,878 + AO356_23950 0.15 -2.3
5,369,878 + AO356_23950 0.15 +0.3
5,369,878 + AO356_23950 0.15 +0.2
5,369,878 + AO356_23950 0.15 +1.0
5,369,879 - AO356_23950 0.15 -0.1
5,369,879 - AO356_23950 0.15 +0.1
5,369,908 + AO356_23950 0.17 -0.7
5,369,908 + AO356_23950 0.17 +0.8
5,369,909 - AO356_23950 0.17 +0.8
5,370,058 + AO356_23950 0.28 -1.3
5,370,058 + AO356_23950 0.28 -1.0
5,370,059 - AO356_23950 0.28 +1.2
5,370,059 - AO356_23950 0.28 +0.3
5,370,080 - AO356_23950 0.30 -2.5
5,370,133 + AO356_23950 0.34 +0.7
5,370,166 + AO356_23950 0.36 -0.1
5,370,166 + AO356_23950 0.36 -1.4
5,370,182 + AO356_23950 0.37 +0.6
5,370,183 - AO356_23950 0.38 +0.9
5,370,183 - AO356_23950 0.38 -0.4
5,370,184 + AO356_23950 0.38 -0.9
5,370,238 + AO356_23950 0.42 -2.6
5,370,238 + AO356_23950 0.42 -0.1
5,370,238 + AO356_23950 0.42 +0.6
5,370,238 + AO356_23950 0.42 +0.3
5,370,238 + AO356_23950 0.42 -0.9
5,370,239 - AO356_23950 0.42 +0.3
5,370,239 - AO356_23950 0.42 +0.7
5,370,289 + AO356_23950 0.45 -0.3
5,370,290 - AO356_23950 0.45 -0.3
5,370,292 + AO356_23950 0.46 -1.1
5,370,292 + AO356_23950 0.46 -0.1
5,370,293 - AO356_23950 0.46 +0.5
5,370,305 + AO356_23950 0.47 -2.9
5,370,325 + AO356_23950 0.48 +0.8
5,370,325 + AO356_23950 0.48 +0.6
5,370,325 + AO356_23950 0.48 -0.5
5,370,325 + AO356_23950 0.48 -2.6
5,370,326 - AO356_23950 0.48 -0.6
5,370,326 - AO356_23950 0.48 +1.2
5,370,558 + AO356_23950 0.65 -1.1
5,370,559 - AO356_23950 0.65 +0.5
5,370,640 + AO356_23950 0.72 +1.1
5,370,640 + AO356_23950 0.72 -0.4
5,370,641 - AO356_23950 0.72 -0.6
5,370,747 + AO356_23950 0.79 -0.3
5,370,747 + AO356_23950 0.79 -1.4
5,370,748 - AO356_23950 0.80 +0.0
5,370,818 - AO356_23950 0.85 +0.6
5,370,847 + AO356_23950 0.87 -0.1
5,370,848 - AO356_23950 0.87 -1.2
5,370,863 - AO356_23950 0.88 +0.8
5,371,062 - +0.8
5,371,274 + -1.0
5,371,275 - -2.2
5,371,278 + -1.6
5,371,279 - -1.7
5,371,298 - -0.9
5,371,324 - -0.6
5,371,367 + +0.1
5,371,367 + -0.3
5,371,367 + -1.9
5,371,367 + -0.1
5,371,367 + +1.2
5,371,368 - -1.9
5,371,546 + AO356_23955 0.29 -2.3
5,371,847 + AO356_23955 0.70 -0.2
5,371,847 + AO356_23955 0.70 -2.7
5,371,847 + AO356_23955 0.70 +0.5
5,371,847 + AO356_23955 0.70 +0.4
5,371,847 + AO356_23955 0.70 -4.0
5,371,847 + AO356_23955 0.70 -1.3
5,371,848 - AO356_23955 0.71 -1.2
5,371,877 + AO356_23955 0.75 +0.2
5,371,877 + AO356_23955 0.75 +0.1
5,371,877 + AO356_23955 0.75 -0.7
5,371,986 - AO356_23955 0.89 +0.7
5,371,986 - AO356_23955 0.89 +0.5

Or see this region's nucleotide sequence