Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04910

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04900 and AO356_04905 are separated by 10 nucleotidesAO356_04905 and AO356_04910 are separated by 12 nucleotidesAO356_04910 and AO356_04915 are separated by 45 nucleotides AO356_04900: AO356_04900 - 4-carboxymuconolactone decarboxylase, at 1,103,548 to 1,103,940 _04900 AO356_04905: AO356_04905 - 3-oxoadipate enol-lactonase, at 1,103,951 to 1,104,766 _04905 AO356_04910: AO356_04910 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,104,779 to 1,106,143 _04910 AO356_04915: AO356_04915 - alpha-ketoglutarate permease, at 1,106,189 to 1,107,487 _04915 Position (kb) 1104 1105 1106 1107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1103.903 kb on - strandat 1103.921 kb on + strandat 1103.921 kb on + strandat 1104.036 kb on + strand, within AO356_04905at 1104.036 kb on + strand, within AO356_04905at 1104.037 kb on - strand, within AO356_04905at 1104.491 kb on - strand, within AO356_04905at 1104.729 kb on + strandat 1104.729 kb on + strandat 1104.730 kb on - strandat 1104.843 kb on + strandat 1104.843 kb on + strandat 1104.843 kb on + strandat 1104.844 kb on - strandat 1104.926 kb on + strand, within AO356_04910at 1104.926 kb on + strand, within AO356_04910at 1104.926 kb on + strand, within AO356_04910at 1104.927 kb on - strand, within AO356_04910at 1104.927 kb on - strand, within AO356_04910at 1105.238 kb on + strand, within AO356_04910at 1105.705 kb on - strand, within AO356_04910at 1105.836 kb on + strand, within AO356_04910at 1105.836 kb on + strand, within AO356_04910at 1105.837 kb on - strand, within AO356_04910at 1105.837 kb on - strand, within AO356_04910at 1105.906 kb on + strand, within AO356_04910at 1105.948 kb on - strand, within AO356_04910at 1106.106 kb on + strandat 1106.107 kb on - strandat 1106.208 kb on + strandat 1106.208 kb on + strandat 1106.208 kb on + strandat 1106.208 kb on + strandat 1106.271 kb on + strandat 1106.271 kb on + strandat 1106.271 kb on + strandat 1106.271 kb on + strandat 1106.272 kb on - strandat 1106.272 kb on - strandat 1106.278 kb on - strandat 1106.322 kb on + strand, within AO356_04915at 1106.322 kb on + strand, within AO356_04915at 1106.323 kb on - strand, within AO356_04915at 1106.323 kb on - strand, within AO356_04915at 1106.361 kb on + strand, within AO356_04915at 1106.361 kb on + strand, within AO356_04915at 1106.362 kb on - strand, within AO356_04915at 1106.436 kb on + strand, within AO356_04915at 1106.437 kb on - strand, within AO356_04915at 1106.437 kb on - strand, within AO356_04915at 1106.437 kb on - strand, within AO356_04915at 1106.437 kb on - strand, within AO356_04915at 1106.473 kb on + strand, within AO356_04915at 1106.473 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.612 kb on - strand, within AO356_04915at 1106.612 kb on - strand, within AO356_04915at 1106.612 kb on - strand, within AO356_04915at 1106.612 kb on - strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.646 kb on + strand, within AO356_04915at 1106.646 kb on + strand, within AO356_04915at 1106.646 kb on + strand, within AO356_04915at 1106.647 kb on - strand, within AO356_04915at 1106.647 kb on - strand, within AO356_04915at 1106.647 kb on - strand, within AO356_04915at 1106.647 kb on - strand, within AO356_04915at 1106.688 kb on + strand, within AO356_04915at 1106.688 kb on + strand, within AO356_04915at 1106.689 kb on - strand, within AO356_04915at 1106.689 kb on - strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.701 kb on - strand, within AO356_04915at 1106.701 kb on - strand, within AO356_04915at 1106.701 kb on - strand, within AO356_04915at 1106.701 kb on - strand, within AO356_04915at 1106.701 kb on - strand, within AO356_04915at 1106.713 kb on + strand, within AO356_04915at 1106.714 kb on - strand, within AO356_04915at 1106.715 kb on + strand, within AO356_04915at 1106.715 kb on + strand, within AO356_04915at 1106.861 kb on + strand, within AO356_04915at 1106.861 kb on + strand, within AO356_04915at 1107.000 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.055 kb on - strand, within AO356_04915at 1107.055 kb on - strand, within AO356_04915at 1107.055 kb on - strand, within AO356_04915at 1107.055 kb on - strand, within AO356_04915

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,103,903 - +1.0
1,103,921 + -0.3
1,103,921 + +1.4
1,104,036 + AO356_04905 0.10 -2.6
1,104,036 + AO356_04905 0.10 +1.3
1,104,037 - AO356_04905 0.11 -1.8
1,104,491 - AO356_04905 0.66 -2.4
1,104,729 + +0.8
1,104,729 + -0.4
1,104,730 - +1.8
1,104,843 + +0.1
1,104,843 + -0.3
1,104,843 + -2.3
1,104,844 - +1.0
1,104,926 + AO356_04910 0.11 -1.4
1,104,926 + AO356_04910 0.11 +0.3
1,104,926 + AO356_04910 0.11 +1.2
1,104,927 - AO356_04910 0.11 -1.4
1,104,927 - AO356_04910 0.11 +2.6
1,105,238 + AO356_04910 0.34 -0.6
1,105,705 - AO356_04910 0.68 +1.3
1,105,836 + AO356_04910 0.77 -2.5
1,105,836 + AO356_04910 0.77 -0.1
1,105,837 - AO356_04910 0.78 +1.2
1,105,837 - AO356_04910 0.78 +1.0
1,105,906 + AO356_04910 0.83 +0.4
1,105,948 - AO356_04910 0.86 +0.3
1,106,106 + +0.6
1,106,107 - +1.7
1,106,208 + -0.8
1,106,208 + -1.9
1,106,208 + +0.8
1,106,208 + -0.3
1,106,271 + +0.6
1,106,271 + +0.1
1,106,271 + -1.6
1,106,271 + +1.0
1,106,272 - +1.5
1,106,272 - +2.0
1,106,278 - -1.2
1,106,322 + AO356_04915 0.10 +0.9
1,106,322 + AO356_04915 0.10 +1.7
1,106,323 - AO356_04915 0.10 -1.2
1,106,323 - AO356_04915 0.10 -1.4
1,106,361 + AO356_04915 0.13 +1.5
1,106,361 + AO356_04915 0.13 +0.7
1,106,362 - AO356_04915 0.13 -1.5
1,106,436 + AO356_04915 0.19 -1.4
1,106,437 - AO356_04915 0.19 -0.1
1,106,437 - AO356_04915 0.19 -1.0
1,106,437 - AO356_04915 0.19 +0.4
1,106,437 - AO356_04915 0.19 -1.6
1,106,473 + AO356_04915 0.22 +1.6
1,106,473 + AO356_04915 0.22 +0.0
1,106,611 + AO356_04915 0.32 +0.3
1,106,611 + AO356_04915 0.32 +0.6
1,106,611 + AO356_04915 0.32 +0.2
1,106,611 + AO356_04915 0.32 +0.6
1,106,611 + AO356_04915 0.32 +1.1
1,106,611 + AO356_04915 0.32 +0.5
1,106,611 + AO356_04915 0.32 -2.0
1,106,611 + AO356_04915 0.32 +2.1
1,106,611 + AO356_04915 0.32 +0.9
1,106,612 - AO356_04915 0.33 +0.3
1,106,612 - AO356_04915 0.33 -0.3
1,106,612 - AO356_04915 0.33 -1.3
1,106,612 - AO356_04915 0.33 -1.7
1,106,617 + AO356_04915 0.33 +0.5
1,106,617 + AO356_04915 0.33 +0.0
1,106,617 + AO356_04915 0.33 +1.2
1,106,617 + AO356_04915 0.33 -1.1
1,106,617 + AO356_04915 0.33 +0.8
1,106,617 + AO356_04915 0.33 +1.0
1,106,617 + AO356_04915 0.33 +1.0
1,106,617 + AO356_04915 0.33 +1.3
1,106,618 - AO356_04915 0.33 +1.2
1,106,618 - AO356_04915 0.33 -0.3
1,106,618 - AO356_04915 0.33 -3.0
1,106,618 - AO356_04915 0.33 -0.3
1,106,618 - AO356_04915 0.33 -1.1
1,106,618 - AO356_04915 0.33 +0.1
1,106,618 - AO356_04915 0.33 +0.7
1,106,618 - AO356_04915 0.33 +0.6
1,106,618 - AO356_04915 0.33 +1.6
1,106,618 - AO356_04915 0.33 -1.1
1,106,619 + AO356_04915 0.33 -0.4
1,106,619 + AO356_04915 0.33 -2.1
1,106,619 + AO356_04915 0.33 +0.5
1,106,619 + AO356_04915 0.33 -0.2
1,106,619 + AO356_04915 0.33 +0.5
1,106,619 + AO356_04915 0.33 -1.6
1,106,620 - AO356_04915 0.33 +0.9
1,106,620 - AO356_04915 0.33 +0.3
1,106,620 - AO356_04915 0.33 -1.0
1,106,620 - AO356_04915 0.33 +0.8
1,106,620 - AO356_04915 0.33 +0.6
1,106,620 - AO356_04915 0.33 +0.6
1,106,620 - AO356_04915 0.33 +0.0
1,106,620 - AO356_04915 0.33 -0.7
1,106,620 - AO356_04915 0.33 +0.8
1,106,620 - AO356_04915 0.33 -0.5
1,106,620 - AO356_04915 0.33 -0.9
1,106,620 - AO356_04915 0.33 +1.5
1,106,646 + AO356_04915 0.35 -0.8
1,106,646 + AO356_04915 0.35 -2.5
1,106,646 + AO356_04915 0.35 -1.2
1,106,647 - AO356_04915 0.35 -0.1
1,106,647 - AO356_04915 0.35 +0.0
1,106,647 - AO356_04915 0.35 -0.3
1,106,647 - AO356_04915 0.35 +0.8
1,106,688 + AO356_04915 0.38 -0.9
1,106,688 + AO356_04915 0.38 +0.4
1,106,689 - AO356_04915 0.38 -0.9
1,106,689 - AO356_04915 0.38 -0.3
1,106,700 + AO356_04915 0.39 -0.6
1,106,700 + AO356_04915 0.39 -0.1
1,106,700 + AO356_04915 0.39 +1.0
1,106,700 + AO356_04915 0.39 +0.4
1,106,700 + AO356_04915 0.39 +0.9
1,106,700 + AO356_04915 0.39 +1.6
1,106,701 - AO356_04915 0.39 +0.9
1,106,701 - AO356_04915 0.39 +0.4
1,106,701 - AO356_04915 0.39 +0.5
1,106,701 - AO356_04915 0.39 -0.0
1,106,701 - AO356_04915 0.39 -0.5
1,106,713 + AO356_04915 0.40 -0.3
1,106,714 - AO356_04915 0.40 -1.3
1,106,715 + AO356_04915 0.40 +0.3
1,106,715 + AO356_04915 0.40 -1.0
1,106,861 + AO356_04915 0.52 +1.2
1,106,861 + AO356_04915 0.52 -1.1
1,107,000 + AO356_04915 0.62 -2.9
1,107,054 + AO356_04915 0.67 +0.3
1,107,054 + AO356_04915 0.67 -0.6
1,107,054 + AO356_04915 0.67 +1.7
1,107,054 + AO356_04915 0.67 -0.0
1,107,054 + AO356_04915 0.67 +0.8
1,107,054 + AO356_04915 0.67 -1.6
1,107,055 - AO356_04915 0.67 -2.8
1,107,055 - AO356_04915 0.67 -0.7
1,107,055 - AO356_04915 0.67 -1.5
1,107,055 - AO356_04915 0.67 +0.2

Or see this region's nucleotide sequence