Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03925

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03915 and AO356_03920 are separated by 9 nucleotidesAO356_03920 and AO356_03925 are separated by 70 nucleotidesAO356_03925 and AO356_03930 are separated by 49 nucleotides AO356_03915: AO356_03915 - flagellar biosynthesis protein FlgI, at 871,840 to 872,946 _03915 AO356_03920: AO356_03920 - flagellar basal body L-ring protein, at 872,956 to 873,651 _03920 AO356_03925: AO356_03925 - flagellar basal-body rod protein FlgG, at 873,722 to 874,507 _03925 AO356_03930: AO356_03930 - flagellar biosynthesis protein FlgF, at 874,557 to 875,294 _03930 Position (kb) 873 874 875Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 872.751 kb on + strand, within AO356_03915at 872.751 kb on + strand, within AO356_03915at 872.751 kb on + strand, within AO356_03915at 872.923 kb on + strandat 872.923 kb on + strandat 872.924 kb on - strandat 872.924 kb on - strandat 872.924 kb on - strandat 872.937 kb on + strandat 872.937 kb on + strandat 872.937 kb on + strandat 872.937 kb on + strandat 872.938 kb on - strandat 872.957 kb on + strandat 872.958 kb on - strandat 872.958 kb on - strandat 872.958 kb on - strandat 873.038 kb on + strand, within AO356_03920at 873.038 kb on + strand, within AO356_03920at 873.039 kb on - strand, within AO356_03920at 873.039 kb on - strand, within AO356_03920at 873.039 kb on - strand, within AO356_03920at 873.039 kb on - strand, within AO356_03920at 873.405 kb on + strand, within AO356_03920at 873.405 kb on + strand, within AO356_03920at 873.406 kb on - strand, within AO356_03920at 873.406 kb on - strand, within AO356_03920at 873.476 kb on + strand, within AO356_03920at 873.476 kb on + strand, within AO356_03920at 873.477 kb on - strand, within AO356_03920at 873.477 kb on - strand, within AO356_03920at 873.503 kb on + strand, within AO356_03920at 873.503 kb on + strand, within AO356_03920at 873.541 kb on - strand, within AO356_03920at 873.560 kb on + strand, within AO356_03920at 873.560 kb on + strand, within AO356_03920at 873.561 kb on - strand, within AO356_03920at 873.561 kb on - strand, within AO356_03920at 873.561 kb on - strand, within AO356_03920at 873.561 kb on - strand, within AO356_03920at 873.561 kb on - strand, within AO356_03920at 873.561 kb on - strand, within AO356_03920at 873.561 kb on - strand, within AO356_03920at 873.563 kb on + strand, within AO356_03920at 873.564 kb on - strand, within AO356_03920at 873.637 kb on + strandat 873.637 kb on + strandat 873.638 kb on - strandat 873.657 kb on + strandat 873.657 kb on + strandat 873.657 kb on + strandat 873.657 kb on + strandat 873.657 kb on + strandat 873.657 kb on + strandat 873.658 kb on - strandat 873.697 kb on + strandat 873.697 kb on + strandat 873.698 kb on - strandat 873.698 kb on - strandat 873.698 kb on - strandat 873.698 kb on - strandat 873.701 kb on + strandat 873.701 kb on + strandat 873.701 kb on + strandat 873.701 kb on + strandat 873.702 kb on - strandat 873.702 kb on - strandat 873.702 kb on - strandat 873.723 kb on + strandat 873.724 kb on - strandat 874.153 kb on + strand, within AO356_03925at 874.153 kb on + strand, within AO356_03925at 874.154 kb on - strand, within AO356_03925at 874.167 kb on + strand, within AO356_03925at 874.168 kb on - strand, within AO356_03925at 874.168 kb on - strand, within AO356_03925at 874.292 kb on + strand, within AO356_03925at 874.292 kb on + strand, within AO356_03925at 874.293 kb on - strand, within AO356_03925at 874.293 kb on - strand, within AO356_03925at 874.364 kb on + strand, within AO356_03925at 874.364 kb on + strand, within AO356_03925at 874.371 kb on + strand, within AO356_03925at 874.372 kb on - strand, within AO356_03925at 874.372 kb on - strand, within AO356_03925at 874.522 kb on - strandat 874.551 kb on + strandat 874.551 kb on + strandat 874.551 kb on + strandat 874.551 kb on + strandat 874.551 kb on + strandat 874.552 kb on - strandat 874.558 kb on + strandat 874.559 kb on - strandat 874.559 kb on - strandat 874.959 kb on + strand, within AO356_03930at 874.999 kb on + strand, within AO356_03930at 874.999 kb on + strand, within AO356_03930at 875.000 kb on - strand, within AO356_03930at 875.000 kb on - strand, within AO356_03930at 875.000 kb on - strand, within AO356_03930at 875.158 kb on - strand, within AO356_03930at 875.158 kb on - strand, within AO356_03930at 875.278 kb on + strandat 875.278 kb on + strandat 875.278 kb on + strandat 875.278 kb on + strandat 875.278 kb on + strandat 875.278 kb on + strandat 875.278 kb on + strandat 875.279 kb on - strandat 875.284 kb on + strandat 875.284 kb on + strandat 875.284 kb on + strandat 875.284 kb on + strandat 875.284 kb on + strandat 875.285 kb on - strandat 875.285 kb on - strandat 875.285 kb on - strandat 875.285 kb on - strandat 875.285 kb on - strandat 875.285 kb on - strandat 875.394 kb on + strandat 875.394 kb on + strandat 875.435 kb on + strandat 875.435 kb on + strandat 875.436 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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872,751 + AO356_03915 0.82 -3.2
872,751 + AO356_03915 0.82 -2.5
872,751 + AO356_03915 0.82 +0.6
872,923 + +0.4
872,923 + +0.8
872,924 - -3.2
872,924 - -1.9
872,924 - -2.1
872,937 + -3.0
872,937 + -2.8
872,937 + -1.8
872,937 + -1.7
872,938 - -2.1
872,957 + -2.2
872,958 - -1.4
872,958 - -1.5
872,958 - -0.9
873,038 + AO356_03920 0.12 -2.3
873,038 + AO356_03920 0.12 -2.2
873,039 - AO356_03920 0.12 -0.4
873,039 - AO356_03920 0.12 -1.9
873,039 - AO356_03920 0.12 -2.4
873,039 - AO356_03920 0.12 -1.8
873,405 + AO356_03920 0.65 -1.7
873,405 + AO356_03920 0.65 -3.9
873,406 - AO356_03920 0.65 -1.2
873,406 - AO356_03920 0.65 -2.4
873,476 + AO356_03920 0.75 -2.5
873,476 + AO356_03920 0.75 -2.4
873,477 - AO356_03920 0.75 -1.1
873,477 - AO356_03920 0.75 +0.1
873,503 + AO356_03920 0.79 -2.2
873,503 + AO356_03920 0.79 -0.1
873,541 - AO356_03920 0.84 -4.4
873,560 + AO356_03920 0.87 +0.7
873,560 + AO356_03920 0.87 +1.1
873,561 - AO356_03920 0.87 -0.1
873,561 - AO356_03920 0.87 -2.6
873,561 - AO356_03920 0.87 -1.6
873,561 - AO356_03920 0.87 -1.4
873,561 - AO356_03920 0.87 -1.5
873,561 - AO356_03920 0.87 -2.7
873,561 - AO356_03920 0.87 -2.7
873,563 + AO356_03920 0.87 -2.3
873,564 - AO356_03920 0.87 -3.2
873,637 + -2.2
873,637 + -1.2
873,638 - -2.5
873,657 + -1.1
873,657 + -2.3
873,657 + -2.0
873,657 + -3.4
873,657 + -2.2
873,657 + -3.1
873,658 - -0.4
873,697 + -2.2
873,697 + -2.5
873,698 - +0.2
873,698 - +0.6
873,698 - +3.9
873,698 - -1.8
873,701 + -2.5
873,701 + -3.6
873,701 + -0.3
873,701 + -2.4
873,702 - -1.1
873,702 - -1.5
873,702 - +0.8
873,723 + -0.5
873,724 - +1.1
874,153 + AO356_03925 0.55 -2.6
874,153 + AO356_03925 0.55 -1.2
874,154 - AO356_03925 0.55 -3.8
874,167 + AO356_03925 0.57 -0.4
874,168 - AO356_03925 0.57 -1.2
874,168 - AO356_03925 0.57 +0.6
874,292 + AO356_03925 0.73 -3.2
874,292 + AO356_03925 0.73 -3.7
874,293 - AO356_03925 0.73 -3.2
874,293 - AO356_03925 0.73 -2.8
874,364 + AO356_03925 0.82 -1.9
874,364 + AO356_03925 0.82 -1.5
874,371 + AO356_03925 0.83 -0.9
874,372 - AO356_03925 0.83 +0.7
874,372 - AO356_03925 0.83 -3.1
874,522 - -2.1
874,551 + -3.5
874,551 + -2.2
874,551 + -2.3
874,551 + -2.6
874,551 + -0.6
874,552 - -0.6
874,558 + -1.8
874,559 - -0.6
874,559 - +0.5
874,959 + AO356_03930 0.54 -1.0
874,999 + AO356_03930 0.60 -1.8
874,999 + AO356_03930 0.60 -2.6
875,000 - AO356_03930 0.60 -3.0
875,000 - AO356_03930 0.60 -2.4
875,000 - AO356_03930 0.60 -2.6
875,158 - AO356_03930 0.81 -2.0
875,158 - AO356_03930 0.81 -1.2
875,278 + -3.6
875,278 + -1.1
875,278 + -3.9
875,278 + -1.5
875,278 + -1.9
875,278 + -1.3
875,278 + -2.9
875,279 - -1.7
875,284 + -3.7
875,284 + -2.5
875,284 + -2.8
875,284 + -0.6
875,284 + -2.4
875,285 - -1.1
875,285 - -2.6
875,285 - -2.9
875,285 - -2.1
875,285 - -0.9
875,285 - -3.1
875,394 + -1.4
875,394 + +0.1
875,435 + -3.1
875,435 + -1.1
875,436 - +0.6

Or see this region's nucleotide sequence