Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03430 and AO356_03435 are separated by 26 nucleotides AO356_03435 and AO356_03440 are separated by 144 nucleotides AO356_03440 and AO356_03445 are separated by 231 nucleotides AO356_03445 and AO356_03450 are separated by 120 nucleotides AO356_03450 and AO356_03455 overlap by 4 nucleotides
AO356_03430: AO356_03430 - hypothetical protein, at 764,016 to 764,240
_03430
AO356_03435: AO356_03435 - integration host factor subunit beta, at 764,267 to 764,563
_03435
AO356_03440: AO356_03440 - hypothetical protein, at 764,708 to 764,986
_03440
AO356_03445: AO356_03445 - 30S ribosomal protein S1, at 765,218 to 766,912
_03445
AO356_03450: AO356_03450 - cytidylate kinase, at 767,033 to 767,722
_03450
AO356_03455: AO356_03455 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 767,719 to 769,926
_03455
Position (kb) 765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 764.256 kb on + strand at 764.256 kb on + strand at 764.306 kb on - strand, within AO356_03435 at 764.306 kb on - strand, within AO356_03435 at 764.306 kb on - strand, within AO356_03435 at 764.385 kb on - strand, within AO356_03435 at 764.400 kb on + strand, within AO356_03435 at 764.613 kb on + strand at 764.614 kb on - strand at 764.645 kb on + strand at 764.645 kb on + strand at 764.645 kb on + strand at 764.645 kb on + strand at 764.646 kb on - strand at 764.646 kb on - strand at 764.731 kb on + strand at 764.732 kb on - strand at 764.732 kb on - strand at 764.732 kb on - strand at 764.732 kb on - strand at 764.732 kb on - strand at 764.742 kb on + strand, within AO356_03440 at 764.770 kb on - strand, within AO356_03440 at 764.814 kb on + strand, within AO356_03440 at 764.814 kb on + strand, within AO356_03440 at 764.815 kb on - strand, within AO356_03440 at 764.848 kb on + strand, within AO356_03440 at 764.848 kb on + strand, within AO356_03440 at 764.849 kb on - strand, within AO356_03440 at 764.849 kb on - strand, within AO356_03440 at 764.980 kb on + strand at 764.980 kb on + strand at 764.980 kb on + strand at 764.980 kb on + strand at 764.980 kb on + strand at 764.980 kb on + strand at 764.981 kb on - strand at 764.981 kb on - strand at 765.022 kb on + strand at 765.022 kb on + strand at 765.022 kb on + strand at 765.022 kb on + strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.049 kb on - strand at 765.067 kb on + strand at 765.067 kb on + strand at 765.067 kb on + strand at 765.068 kb on - strand at 765.068 kb on - strand at 765.155 kb on - strand at 765.155 kb on - strand at 765.161 kb on + strand at 765.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 764,256 + +0.6 764,256 + +1.0 764,306 - AO356_03435 0.13 +2.1 764,306 - AO356_03435 0.13 +0.6 764,306 - AO356_03435 0.13 +0.2 764,385 - AO356_03435 0.40 +2.9 764,400 + AO356_03435 0.45 +0.5 764,613 + -1.0 764,614 - -1.2 764,645 + +0.4 764,645 + +2.2 764,645 + +1.4 764,645 + -1.5 764,646 - -0.8 764,646 - -1.1 764,731 + +0.7 764,732 - -0.8 764,732 - -0.4 764,732 - +0.1 764,732 - +0.1 764,732 - +0.6 764,742 + AO356_03440 0.12 +0.3 764,770 - AO356_03440 0.22 -1.7 764,814 + AO356_03440 0.38 -0.4 764,814 + AO356_03440 0.38 -0.9 764,815 - AO356_03440 0.38 +1.3 764,848 + AO356_03440 0.50 +0.1 764,848 + AO356_03440 0.50 +0.7 764,849 - AO356_03440 0.51 +0.4 764,849 - AO356_03440 0.51 -2.9 764,980 + +1.2 764,980 + +0.3 764,980 + -0.7 764,980 + +1.6 764,980 + +1.2 764,980 + -0.5 764,981 - +0.5 764,981 - +1.0 765,022 + +0.7 765,022 + +1.1 765,022 + +1.3 765,022 + +1.4 765,023 - -1.7 765,023 - -0.1 765,023 - +0.7 765,023 - -0.7 765,023 - -2.2 765,023 - +1.7 765,023 - -1.3 765,023 - -1.1 765,023 - -0.5 765,023 - -1.1 765,023 - +0.9 765,024 + +0.4 765,024 + +0.5 765,024 + +0.3 765,024 + +0.5 765,024 + -0.9 765,024 + +0.2 765,024 + +0.7 765,025 - -1.2 765,025 - +1.1 765,025 - -2.1 765,025 - +1.8 765,025 - -1.6 765,025 - -0.6 765,025 - +0.2 765,049 - -0.4 765,067 + -2.0 765,067 + -0.7 765,067 + -0.2 765,068 - -1.5 765,068 - +1.2 765,155 - +0.6 765,155 - +0.3 765,161 + +0.7 765,162 - -0.0
Or see this region's nucleotide sequence