Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03320 and AO356_03325 are separated by 471 nucleotides AO356_03325 and AO356_03330 are separated by 15 nucleotides AO356_03330 and AO356_03335 are separated by 169 nucleotides
AO356_03320: AO356_03320 - ethanolamine permease, at 738,271 to 739,635
_03320
AO356_03325: AO356_03325 - hypothetical protein, at 740,107 to 740,958
_03325
AO356_03330: AO356_03330 - GntR family transcriptional regulator, at 740,974 to 741,627
_03330
AO356_03335: AO356_03335 - competence protein ComEA, at 741,797 to 742,132
_03335
Position (kb) 740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 739.166 kb on - strand, within AO356_03320 at 739.291 kb on + strand, within AO356_03320 at 739.291 kb on + strand, within AO356_03320 at 739.375 kb on + strand, within AO356_03320 at 739.375 kb on + strand, within AO356_03320 at 739.375 kb on + strand, within AO356_03320 at 739.375 kb on + strand, within AO356_03320 at 739.375 kb on + strand, within AO356_03320 at 739.375 kb on + strand, within AO356_03320 at 739.376 kb on - strand, within AO356_03320 at 739.376 kb on - strand, within AO356_03320 at 739.376 kb on - strand, within AO356_03320 at 739.376 kb on - strand, within AO356_03320 at 739.376 kb on - strand, within AO356_03320 at 739.376 kb on - strand, within AO356_03320 at 739.376 kb on - strand, within AO356_03320 at 739.434 kb on + strand, within AO356_03320 at 739.434 kb on + strand, within AO356_03320 at 739.434 kb on + strand, within AO356_03320 at 739.434 kb on + strand, within AO356_03320 at 739.435 kb on - strand, within AO356_03320 at 739.570 kb on + strand at 739.570 kb on + strand at 739.571 kb on - strand at 739.658 kb on + strand at 739.659 kb on - strand at 739.659 kb on - strand at 739.661 kb on + strand at 739.661 kb on + strand at 739.662 kb on - strand at 739.662 kb on - strand at 739.662 kb on - strand at 739.662 kb on - strand at 739.691 kb on + strand at 739.691 kb on + strand at 739.692 kb on - strand at 739.692 kb on - strand at 739.698 kb on + strand at 739.698 kb on + strand at 739.699 kb on - strand at 739.699 kb on - strand at 739.699 kb on - strand at 739.754 kb on + strand at 739.754 kb on + strand at 739.755 kb on - strand at 739.764 kb on + strand at 739.764 kb on + strand at 739.765 kb on - strand at 739.765 kb on - strand at 739.782 kb on - strand at 739.995 kb on - strand at 740.108 kb on + strand at 740.108 kb on + strand at 740.108 kb on + strand at 740.108 kb on + strand at 740.109 kb on - strand at 740.109 kb on - strand at 740.156 kb on + strand at 740.210 kb on + strand, within AO356_03325 at 740.210 kb on + strand, within AO356_03325 at 740.211 kb on - strand, within AO356_03325 at 740.211 kb on - strand, within AO356_03325 at 740.211 kb on - strand, within AO356_03325 at 740.211 kb on - strand, within AO356_03325 at 740.211 kb on - strand, within AO356_03325 at 740.345 kb on + strand, within AO356_03325 at 740.345 kb on + strand, within AO356_03325 at 740.345 kb on + strand, within AO356_03325 at 740.345 kb on + strand, within AO356_03325 at 740.346 kb on - strand, within AO356_03325 at 740.346 kb on - strand, within AO356_03325 at 740.381 kb on + strand, within AO356_03325 at 740.381 kb on + strand, within AO356_03325 at 740.381 kb on + strand, within AO356_03325 at 740.381 kb on + strand, within AO356_03325 at 740.381 kb on + strand, within AO356_03325 at 740.382 kb on - strand, within AO356_03325 at 740.382 kb on - strand, within AO356_03325 at 740.382 kb on - strand, within AO356_03325 at 740.382 kb on - strand, within AO356_03325 at 740.382 kb on - strand, within AO356_03325 at 740.382 kb on - strand, within AO356_03325 at 740.382 kb on - strand, within AO356_03325 at 740.382 kb on - strand, within AO356_03325 at 740.382 kb on - strand, within AO356_03325 at 740.382 kb on - strand, within AO356_03325 at 740.418 kb on + strand, within AO356_03325 at 740.419 kb on - strand, within AO356_03325 at 740.419 kb on - strand, within AO356_03325 at 740.419 kb on - strand, within AO356_03325 at 740.425 kb on + strand, within AO356_03325 at 740.425 kb on + strand, within AO356_03325 at 740.531 kb on + strand, within AO356_03325 at 740.531 kb on + strand, within AO356_03325 at 740.531 kb on + strand, within AO356_03325 at 740.532 kb on - strand, within AO356_03325 at 740.532 kb on - strand, within AO356_03325 at 740.592 kb on - strand, within AO356_03325 at 740.888 kb on + strand at 740.888 kb on + strand at 740.888 kb on + strand at 740.889 kb on - strand at 740.889 kb on - strand at 740.898 kb on + strand at 740.899 kb on - strand at 740.934 kb on - strand at 740.945 kb on + strand at 740.946 kb on - strand at 740.954 kb on + strand at 740.955 kb on - strand at 740.955 kb on - strand at 740.955 kb on - strand at 741.092 kb on + strand, within AO356_03330 at 741.092 kb on + strand, within AO356_03330 at 741.092 kb on + strand, within AO356_03330 at 741.093 kb on - strand, within AO356_03330 at 741.177 kb on + strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.326 kb on + strand, within AO356_03330 at 741.327 kb on - strand, within AO356_03330 at 741.413 kb on - strand, within AO356_03330 at 741.413 kb on - strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.479 kb on - strand, within AO356_03330 at 741.512 kb on + strand, within AO356_03330 at 741.512 kb on + strand, within AO356_03330 at 741.513 kb on - strand, within AO356_03330 at 741.513 kb on - strand, within AO356_03330 at 741.535 kb on + strand, within AO356_03330 at 741.535 kb on + strand, within AO356_03330 at 741.546 kb on + strand, within AO356_03330 at 741.547 kb on - strand, within AO356_03330 at 741.656 kb on + strand at 741.657 kb on - strand at 741.665 kb on + strand at 741.665 kb on + strand at 741.669 kb on + strand at 741.669 kb on + strand at 741.669 kb on + strand at 741.670 kb on - strand at 741.670 kb on - strand at 741.670 kb on - strand at 741.903 kb on + strand, within AO356_03335
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 739,166 - AO356_03320 0.66 -0.3 739,291 + AO356_03320 0.75 -1.9 739,291 + AO356_03320 0.75 +0.6 739,375 + AO356_03320 0.81 +0.9 739,375 + AO356_03320 0.81 -0.9 739,375 + AO356_03320 0.81 +1.6 739,375 + AO356_03320 0.81 -1.3 739,375 + AO356_03320 0.81 -0.9 739,375 + AO356_03320 0.81 -0.2 739,376 - AO356_03320 0.81 +1.9 739,376 - AO356_03320 0.81 -0.4 739,376 - AO356_03320 0.81 -0.6 739,376 - AO356_03320 0.81 -2.3 739,376 - AO356_03320 0.81 -2.1 739,376 - AO356_03320 0.81 +2.1 739,376 - AO356_03320 0.81 +3.8 739,434 + AO356_03320 0.85 +1.4 739,434 + AO356_03320 0.85 +0.4 739,434 + AO356_03320 0.85 -2.0 739,434 + AO356_03320 0.85 -0.9 739,435 - AO356_03320 0.85 -0.8 739,570 + -0.1 739,570 + -1.1 739,571 - +0.2 739,658 + -0.8 739,659 - +1.2 739,659 - +0.6 739,661 + +0.3 739,661 + -0.2 739,662 - +0.4 739,662 - -2.0 739,662 - -1.3 739,662 - -2.3 739,691 + +0.3 739,691 + -3.0 739,692 - -0.7 739,692 - +0.3 739,698 + +0.6 739,698 + -0.9 739,699 - -0.3 739,699 - +0.3 739,699 - -0.0 739,754 + +0.7 739,754 + -0.1 739,755 - -2.0 739,764 + +0.0 739,764 + -0.1 739,765 - +0.9 739,765 - +2.0 739,782 - +0.4 739,995 - +0.0 740,108 + +0.4 740,108 + +1.5 740,108 + +1.0 740,108 + -2.4 740,109 - +0.6 740,109 - -0.8 740,156 + +0.5 740,210 + AO356_03325 0.12 +0.1 740,210 + AO356_03325 0.12 +0.4 740,211 - AO356_03325 0.12 +0.5 740,211 - AO356_03325 0.12 +1.3 740,211 - AO356_03325 0.12 +0.3 740,211 - AO356_03325 0.12 -0.9 740,211 - AO356_03325 0.12 +0.1 740,345 + AO356_03325 0.28 +1.5 740,345 + AO356_03325 0.28 +1.5 740,345 + AO356_03325 0.28 -1.2 740,345 + AO356_03325 0.28 +0.1 740,346 - AO356_03325 0.28 +1.3 740,346 - AO356_03325 0.28 +1.5 740,381 + AO356_03325 0.32 +1.2 740,381 + AO356_03325 0.32 +2.8 740,381 + AO356_03325 0.32 -0.2 740,381 + AO356_03325 0.32 -0.0 740,381 + AO356_03325 0.32 +2.3 740,382 - AO356_03325 0.32 +0.1 740,382 - AO356_03325 0.32 -0.0 740,382 - AO356_03325 0.32 -0.9 740,382 - AO356_03325 0.32 -0.0 740,382 - AO356_03325 0.32 +0.5 740,382 - AO356_03325 0.32 -0.1 740,382 - AO356_03325 0.32 -2.1 740,382 - AO356_03325 0.32 +0.6 740,382 - AO356_03325 0.32 +1.5 740,382 - AO356_03325 0.32 -2.8 740,418 + AO356_03325 0.37 -1.2 740,419 - AO356_03325 0.37 -1.2 740,419 - AO356_03325 0.37 -1.3 740,419 - AO356_03325 0.37 -0.6 740,425 + AO356_03325 0.37 +0.2 740,425 + AO356_03325 0.37 -2.8 740,531 + AO356_03325 0.50 -0.9 740,531 + AO356_03325 0.50 +0.3 740,531 + AO356_03325 0.50 +0.5 740,532 - AO356_03325 0.50 -0.6 740,532 - AO356_03325 0.50 +0.6 740,592 - AO356_03325 0.57 +1.6 740,888 + +0.1 740,888 + -0.1 740,888 + -0.1 740,889 - -0.4 740,889 - +0.6 740,898 + +1.7 740,899 - +0.6 740,934 - -0.8 740,945 + +1.7 740,946 - -0.4 740,954 + -0.0 740,955 - +1.0 740,955 - +0.5 740,955 - -1.6 741,092 + AO356_03330 0.18 +0.9 741,092 + AO356_03330 0.18 +1.6 741,092 + AO356_03330 0.18 -0.3 741,093 - AO356_03330 0.18 -0.4 741,177 + AO356_03330 0.31 -2.0 741,178 - AO356_03330 0.31 -3.2 741,178 - AO356_03330 0.31 -1.3 741,178 - AO356_03330 0.31 +0.3 741,178 - AO356_03330 0.31 +0.8 741,178 - AO356_03330 0.31 +1.7 741,326 + AO356_03330 0.54 -1.7 741,327 - AO356_03330 0.54 -1.7 741,413 - AO356_03330 0.67 +1.7 741,413 - AO356_03330 0.67 +0.5 741,442 + AO356_03330 0.72 -0.3 741,442 + AO356_03330 0.72 +0.8 741,442 + AO356_03330 0.72 +0.0 741,442 + AO356_03330 0.72 +1.4 741,443 - AO356_03330 0.72 +0.5 741,443 - AO356_03330 0.72 +0.8 741,443 - AO356_03330 0.72 +1.2 741,443 - AO356_03330 0.72 -0.5 741,479 - AO356_03330 0.77 -1.3 741,512 + AO356_03330 0.82 +0.9 741,512 + AO356_03330 0.82 +0.0 741,513 - AO356_03330 0.82 -0.1 741,513 - AO356_03330 0.82 +0.7 741,535 + AO356_03330 0.86 +0.2 741,535 + AO356_03330 0.86 -0.1 741,546 + AO356_03330 0.87 -0.7 741,547 - AO356_03330 0.88 +0.9 741,656 + +1.4 741,657 - +0.8 741,665 + +2.1 741,665 + -0.0 741,669 + -0.0 741,669 + +1.1 741,669 + -0.2 741,670 - -1.9 741,670 - +1.2 741,670 - +0.1 741,903 + AO356_03335 0.32 -0.1
Or see this region's nucleotide sequence