Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03020

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03015 and AO356_03020 are separated by 29 nucleotidesAO356_03020 and AO356_03025 are separated by 337 nucleotidesAO356_03025 and AO356_03030 are separated by 2 nucleotides AO356_03015: AO356_03015 - sodium:proton antiporter, at 671,413 to 673,125 _03015 AO356_03020: AO356_03020 - ammonium transporter, at 673,155 to 674,363 _03020 AO356_03025: AO356_03025 - hypothetical protein, at 674,701 to 675,015 _03025 AO356_03030: AO356_03030 - hypothetical protein, at 675,018 to 675,407 _03030 Position (kb) 673 674 675Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.194 kb on + strand, within AO356_03015at 672.195 kb on - strand, within AO356_03015at 672.195 kb on - strand, within AO356_03015at 672.195 kb on - strand, within AO356_03015at 672.195 kb on - strand, within AO356_03015at 672.893 kb on + strand, within AO356_03015at 672.894 kb on - strand, within AO356_03015at 673.124 kb on - strandat 673.124 kb on - strandat 673.124 kb on - strandat 673.133 kb on + strandat 673.134 kb on - strandat 673.142 kb on + strandat 673.142 kb on + strandat 673.142 kb on + strandat 673.142 kb on + strandat 673.142 kb on + strandat 673.143 kb on - strandat 673.143 kb on - strandat 673.143 kb on - strandat 673.143 kb on - strandat 673.205 kb on - strandat 673.205 kb on - strandat 673.205 kb on - strandat 673.207 kb on + strandat 673.207 kb on + strandat 673.207 kb on + strandat 673.208 kb on - strandat 673.208 kb on - strandat 673.208 kb on - strandat 673.208 kb on - strandat 673.258 kb on + strandat 673.259 kb on - strandat 674.024 kb on + strand, within AO356_03020at 674.024 kb on + strand, within AO356_03020at 674.093 kb on - strand, within AO356_03020at 674.113 kb on - strand, within AO356_03020at 674.170 kb on + strand, within AO356_03020at 674.170 kb on + strand, within AO356_03020at 674.171 kb on - strand, within AO356_03020at 674.171 kb on - strand, within AO356_03020at 674.316 kb on - strandat 674.316 kb on - strandat 674.482 kb on + strandat 674.482 kb on + strandat 674.483 kb on - strandat 674.483 kb on - strandat 674.532 kb on + strandat 674.533 kb on - strandat 674.597 kb on + strandat 674.597 kb on + strandat 674.597 kb on + strandat 674.598 kb on - strandat 674.598 kb on - strandat 674.598 kb on - strandat 674.626 kb on - strandat 674.662 kb on + strandat 674.662 kb on + strandat 674.663 kb on - strandat 674.686 kb on + strandat 674.915 kb on + strand, within AO356_03025at 674.915 kb on + strand, within AO356_03025at 674.916 kb on - strand, within AO356_03025at 674.932 kb on + strand, within AO356_03025at 674.932 kb on + strand, within AO356_03025at 674.933 kb on - strand, within AO356_03025at 674.933 kb on - strand, within AO356_03025at 674.933 kb on - strand, within AO356_03025at 674.933 kb on - strand, within AO356_03025at 674.936 kb on + strand, within AO356_03025at 674.936 kb on + strand, within AO356_03025at 674.936 kb on + strand, within AO356_03025at 674.936 kb on + strand, within AO356_03025at 674.936 kb on + strand, within AO356_03025at 674.937 kb on - strand, within AO356_03025at 674.937 kb on - strand, within AO356_03025at 674.937 kb on - strand, within AO356_03025at 674.960 kb on + strand, within AO356_03025at 674.961 kb on - strand, within AO356_03025at 675.241 kb on + strand, within AO356_03030at 675.252 kb on + strand, within AO356_03030at 675.252 kb on + strand, within AO356_03030at 675.253 kb on - strand, within AO356_03030at 675.288 kb on + strand, within AO356_03030at 675.289 kb on - strand, within AO356_03030at 675.289 kb on - strand, within AO356_03030at 675.289 kb on - strand, within AO356_03030at 675.336 kb on + strand, within AO356_03030at 675.336 kb on + strand, within AO356_03030at 675.337 kb on - strand, within AO356_03030at 675.337 kb on - strand, within AO356_03030

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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672,194 + AO356_03015 0.46 -0.1
672,194 + AO356_03015 0.46 +0.4
672,194 + AO356_03015 0.46 -0.6
672,194 + AO356_03015 0.46 +1.7
672,194 + AO356_03015 0.46 +0.5
672,194 + AO356_03015 0.46 -1.6
672,194 + AO356_03015 0.46 +0.5
672,194 + AO356_03015 0.46 +0.2
672,194 + AO356_03015 0.46 -0.3
672,194 + AO356_03015 0.46 +0.5
672,194 + AO356_03015 0.46 -1.5
672,194 + AO356_03015 0.46 +0.6
672,195 - AO356_03015 0.46 +0.3
672,195 - AO356_03015 0.46 -2.9
672,195 - AO356_03015 0.46 +1.7
672,195 - AO356_03015 0.46 -0.7
672,893 + AO356_03015 0.86 +0.1
672,894 - AO356_03015 0.86 -0.5
673,124 - -0.9
673,124 - -1.8
673,124 - -1.0
673,133 + +0.7
673,134 - -0.6
673,142 + -1.9
673,142 + -2.1
673,142 + +0.8
673,142 + -0.2
673,142 + +1.3
673,143 - -0.0
673,143 - -0.7
673,143 - +0.6
673,143 - +1.4
673,205 - +0.5
673,205 - -2.3
673,205 - +0.3
673,207 + +0.2
673,207 + -1.6
673,207 + +0.7
673,208 - -0.4
673,208 - +0.8
673,208 - -1.0
673,208 - -1.1
673,258 + +1.0
673,259 - -0.3
674,024 + AO356_03020 0.72 +1.9
674,024 + AO356_03020 0.72 +1.0
674,093 - AO356_03020 0.78 +0.5
674,113 - AO356_03020 0.79 +0.4
674,170 + AO356_03020 0.84 -0.5
674,170 + AO356_03020 0.84 -0.2
674,171 - AO356_03020 0.84 +1.1
674,171 - AO356_03020 0.84 +2.6
674,316 - -0.4
674,316 - -0.5
674,482 + +1.8
674,482 + -0.6
674,483 - +0.2
674,483 - +1.4
674,532 + -0.3
674,533 - +0.1
674,597 + +0.1
674,597 + +1.0
674,597 + +0.2
674,598 - -0.5
674,598 - +2.3
674,598 - +2.3
674,626 - +0.4
674,662 + +0.6
674,662 + +0.4
674,663 - +0.7
674,686 + -0.3
674,915 + AO356_03025 0.68 -1.7
674,915 + AO356_03025 0.68 +0.1
674,916 - AO356_03025 0.68 -0.7
674,932 + AO356_03025 0.73 +0.7
674,932 + AO356_03025 0.73 -0.1
674,933 - AO356_03025 0.74 +1.1
674,933 - AO356_03025 0.74 -0.1
674,933 - AO356_03025 0.74 +0.4
674,933 - AO356_03025 0.74 +0.7
674,936 + AO356_03025 0.75 -0.7
674,936 + AO356_03025 0.75 +0.3
674,936 + AO356_03025 0.75 -0.3
674,936 + AO356_03025 0.75 +0.6
674,936 + AO356_03025 0.75 -0.4
674,937 - AO356_03025 0.75 +1.0
674,937 - AO356_03025 0.75 -0.1
674,937 - AO356_03025 0.75 +1.3
674,960 + AO356_03025 0.82 +0.3
674,961 - AO356_03025 0.83 +0.6
675,241 + AO356_03030 0.57 +2.3
675,252 + AO356_03030 0.60 -0.3
675,252 + AO356_03030 0.60 -0.8
675,253 - AO356_03030 0.60 +0.4
675,288 + AO356_03030 0.69 +0.0
675,289 - AO356_03030 0.69 -1.0
675,289 - AO356_03030 0.69 +1.6
675,289 - AO356_03030 0.69 +1.5
675,336 + AO356_03030 0.82 +0.3
675,336 + AO356_03030 0.82 +0.1
675,337 - AO356_03030 0.82 +2.3
675,337 - AO356_03030 0.82 -1.8

Or see this region's nucleotide sequence