Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02765

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02760 and AO356_02765 are separated by 9 nucleotidesAO356_02765 and AO356_02770 are separated by 427 nucleotides AO356_02760: AO356_02760 - MFS transporter, at 605,561 to 606,772 _02760 AO356_02765: AO356_02765 - protein kinase, at 606,782 to 608,452 _02765 AO356_02770: AO356_02770 - nitrite reductase, at 608,880 to 611,333 _02770 Position (kb) 606 607 608 609Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 605.995 kb on + strand, within AO356_02760at 606.164 kb on + strand, within AO356_02760at 606.213 kb on - strand, within AO356_02760at 606.278 kb on + strand, within AO356_02760at 606.279 kb on - strand, within AO356_02760at 606.305 kb on + strand, within AO356_02760at 606.305 kb on + strand, within AO356_02760at 606.308 kb on + strand, within AO356_02760at 606.308 kb on + strand, within AO356_02760at 606.309 kb on - strand, within AO356_02760at 606.309 kb on - strand, within AO356_02760at 606.309 kb on - strand, within AO356_02760at 606.309 kb on - strand, within AO356_02760at 606.309 kb on - strand, within AO356_02760at 606.404 kb on + strand, within AO356_02760at 606.404 kb on + strand, within AO356_02760at 606.404 kb on + strand, within AO356_02760at 606.404 kb on + strand, within AO356_02760at 606.404 kb on + strand, within AO356_02760at 606.404 kb on + strand, within AO356_02760at 606.404 kb on + strand, within AO356_02760at 606.405 kb on - strand, within AO356_02760at 606.412 kb on - strand, within AO356_02760at 606.412 kb on - strand, within AO356_02760at 606.459 kb on - strand, within AO356_02760at 606.459 kb on - strand, within AO356_02760at 606.650 kb on + strand, within AO356_02760at 606.650 kb on + strand, within AO356_02760at 606.650 kb on + strand, within AO356_02760at 606.651 kb on - strandat 606.770 kb on + strandat 606.980 kb on + strand, within AO356_02765at 606.980 kb on + strand, within AO356_02765at 606.980 kb on + strand, within AO356_02765at 606.980 kb on + strand, within AO356_02765at 606.983 kb on + strand, within AO356_02765at 606.983 kb on + strand, within AO356_02765at 606.983 kb on + strand, within AO356_02765at 606.983 kb on + strand, within AO356_02765at 607.154 kb on + strand, within AO356_02765at 607.308 kb on + strand, within AO356_02765at 607.309 kb on - strand, within AO356_02765at 607.309 kb on - strand, within AO356_02765at 607.778 kb on + strand, within AO356_02765at 607.778 kb on + strand, within AO356_02765at 607.778 kb on + strand, within AO356_02765at 607.778 kb on + strand, within AO356_02765at 607.778 kb on + strand, within AO356_02765at 607.779 kb on - strand, within AO356_02765at 607.779 kb on - strand, within AO356_02765at 607.779 kb on - strand, within AO356_02765at 607.779 kb on - strand, within AO356_02765at 607.779 kb on - strand, within AO356_02765at 607.779 kb on - strand, within AO356_02765at 607.779 kb on - strand, within AO356_02765at 607.779 kb on - strand, within AO356_02765at 607.779 kb on - strand, within AO356_02765at 607.781 kb on + strand, within AO356_02765at 607.781 kb on + strand, within AO356_02765at 607.781 kb on + strand, within AO356_02765at 607.781 kb on + strand, within AO356_02765at 607.781 kb on + strand, within AO356_02765at 607.782 kb on - strand, within AO356_02765at 607.782 kb on - strand, within AO356_02765at 607.782 kb on - strand, within AO356_02765at 607.782 kb on - strand, within AO356_02765at 607.782 kb on - strand, within AO356_02765at 607.797 kb on - strand, within AO356_02765at 607.917 kb on - strand, within AO356_02765at 607.917 kb on - strand, within AO356_02765at 607.917 kb on - strand, within AO356_02765at 607.995 kb on - strand, within AO356_02765at 607.995 kb on - strand, within AO356_02765at 607.995 kb on - strand, within AO356_02765at 608.048 kb on + strand, within AO356_02765at 608.048 kb on + strand, within AO356_02765at 608.048 kb on + strand, within AO356_02765at 608.049 kb on - strand, within AO356_02765at 608.049 kb on - strand, within AO356_02765at 608.049 kb on - strand, within AO356_02765at 608.049 kb on - strand, within AO356_02765at 608.049 kb on - strand, within AO356_02765at 608.102 kb on + strand, within AO356_02765at 608.102 kb on + strand, within AO356_02765at 608.102 kb on + strand, within AO356_02765at 608.102 kb on + strand, within AO356_02765at 608.103 kb on - strand, within AO356_02765at 608.103 kb on - strand, within AO356_02765at 608.103 kb on - strand, within AO356_02765at 608.123 kb on + strand, within AO356_02765at 608.124 kb on - strand, within AO356_02765at 608.343 kb on + strandat 608.343 kb on + strandat 608.447 kb on - strandat 608.558 kb on + strandat 608.558 kb on + strandat 608.559 kb on - strandat 608.559 kb on - strandat 608.615 kb on + strandat 608.615 kb on + strandat 608.616 kb on - strandat 608.616 kb on - strandat 608.656 kb on + strandat 608.657 kb on - strandat 608.657 kb on - strandat 608.710 kb on + strandat 608.710 kb on + strandat 608.710 kb on + strandat 608.710 kb on + strandat 608.710 kb on + strandat 608.711 kb on - strandat 608.711 kb on - strandat 608.711 kb on - strandat 608.711 kb on - strandat 608.714 kb on + strandat 608.714 kb on + strandat 608.714 kb on + strandat 608.714 kb on + strandat 608.715 kb on - strandat 608.715 kb on - strandat 608.715 kb on - strandat 608.715 kb on - strandat 608.784 kb on + strandat 608.818 kb on + strandat 608.967 kb on + strandat 608.967 kb on + strandat 608.968 kb on - strandat 609.006 kb on + strandat 609.006 kb on + strandat 609.006 kb on + strandat 609.007 kb on - strandat 609.007 kb on - strandat 609.007 kb on - strandat 609.243 kb on - strand, within AO356_02770

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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605,995 + AO356_02760 0.36 +0.2
606,164 + AO356_02760 0.50 +0.6
606,213 - AO356_02760 0.54 -0.0
606,278 + AO356_02760 0.59 -1.8
606,279 - AO356_02760 0.59 +0.0
606,305 + AO356_02760 0.61 +0.7
606,305 + AO356_02760 0.61 +1.8
606,308 + AO356_02760 0.62 -1.0
606,308 + AO356_02760 0.62 -0.6
606,309 - AO356_02760 0.62 -2.6
606,309 - AO356_02760 0.62 -1.9
606,309 - AO356_02760 0.62 -0.0
606,309 - AO356_02760 0.62 +1.2
606,309 - AO356_02760 0.62 -0.3
606,404 + AO356_02760 0.70 +0.4
606,404 + AO356_02760 0.70 +0.2
606,404 + AO356_02760 0.70 +0.4
606,404 + AO356_02760 0.70 -0.7
606,404 + AO356_02760 0.70 -2.0
606,404 + AO356_02760 0.70 -2.0
606,404 + AO356_02760 0.70 -1.9
606,405 - AO356_02760 0.70 +2.8
606,412 - AO356_02760 0.70 +0.2
606,412 - AO356_02760 0.70 -3.2
606,459 - AO356_02760 0.74 +0.4
606,459 - AO356_02760 0.74 +1.3
606,650 + AO356_02760 0.90 +0.6
606,650 + AO356_02760 0.90 -1.8
606,650 + AO356_02760 0.90 +0.1
606,651 - -2.6
606,770 + -0.7
606,980 + AO356_02765 0.12 -1.0
606,980 + AO356_02765 0.12 +1.2
606,980 + AO356_02765 0.12 +1.3
606,980 + AO356_02765 0.12 -0.5
606,983 + AO356_02765 0.12 +1.4
606,983 + AO356_02765 0.12 +0.6
606,983 + AO356_02765 0.12 +1.0
606,983 + AO356_02765 0.12 +1.7
607,154 + AO356_02765 0.22 -1.0
607,308 + AO356_02765 0.31 -0.5
607,309 - AO356_02765 0.32 -0.8
607,309 - AO356_02765 0.32 -0.7
607,778 + AO356_02765 0.60 -0.2
607,778 + AO356_02765 0.60 +1.3
607,778 + AO356_02765 0.60 +0.0
607,778 + AO356_02765 0.60 +1.6
607,778 + AO356_02765 0.60 -0.8
607,779 - AO356_02765 0.60 +0.1
607,779 - AO356_02765 0.60 +0.0
607,779 - AO356_02765 0.60 +0.4
607,779 - AO356_02765 0.60 -1.9
607,779 - AO356_02765 0.60 +1.5
607,779 - AO356_02765 0.60 +1.6
607,779 - AO356_02765 0.60 -1.1
607,779 - AO356_02765 0.60 -0.2
607,779 - AO356_02765 0.60 +0.2
607,781 + AO356_02765 0.60 +0.9
607,781 + AO356_02765 0.60 -0.3
607,781 + AO356_02765 0.60 -2.4
607,781 + AO356_02765 0.60 +1.3
607,781 + AO356_02765 0.60 -2.8
607,782 - AO356_02765 0.60 +0.7
607,782 - AO356_02765 0.60 +0.6
607,782 - AO356_02765 0.60 -1.5
607,782 - AO356_02765 0.60 +0.4
607,782 - AO356_02765 0.60 -0.7
607,797 - AO356_02765 0.61 +1.0
607,917 - AO356_02765 0.68 +1.5
607,917 - AO356_02765 0.68 +0.6
607,917 - AO356_02765 0.68 -0.5
607,995 - AO356_02765 0.73 +1.0
607,995 - AO356_02765 0.73 +0.8
607,995 - AO356_02765 0.73 +0.5
608,048 + AO356_02765 0.76 -2.0
608,048 + AO356_02765 0.76 -0.2
608,048 + AO356_02765 0.76 -0.0
608,049 - AO356_02765 0.76 +1.5
608,049 - AO356_02765 0.76 +0.7
608,049 - AO356_02765 0.76 +2.1
608,049 - AO356_02765 0.76 -0.9
608,049 - AO356_02765 0.76 -1.0
608,102 + AO356_02765 0.79 +0.6
608,102 + AO356_02765 0.79 +0.3
608,102 + AO356_02765 0.79 +1.2
608,102 + AO356_02765 0.79 -0.5
608,103 - AO356_02765 0.79 -0.6
608,103 - AO356_02765 0.79 +0.9
608,103 - AO356_02765 0.79 +1.6
608,123 + AO356_02765 0.80 +0.0
608,124 - AO356_02765 0.80 +1.4
608,343 + +0.2
608,343 + -1.2
608,447 - -0.7
608,558 + -1.9
608,558 + -0.1
608,559 - +1.6
608,559 - -2.8
608,615 + +0.8
608,615 + +0.0
608,616 - -0.2
608,616 - +0.4
608,656 + +0.1
608,657 - -0.9
608,657 - -1.0
608,710 + +0.9
608,710 + +0.1
608,710 + +1.1
608,710 + -0.0
608,710 + +1.0
608,711 - +0.6
608,711 - +0.7
608,711 - +1.1
608,711 - -0.8
608,714 + -0.1
608,714 + -2.0
608,714 + -1.1
608,714 + +1.3
608,715 - +1.4
608,715 - +0.1
608,715 - +1.0
608,715 - +0.6
608,784 + -0.0
608,818 + -0.2
608,967 + -0.7
608,967 + -0.4
608,968 - +0.4
609,006 + +0.4
609,006 + +1.1
609,006 + +0.8
609,007 - -0.7
609,007 - -0.1
609,007 - +0.5
609,243 - AO356_02770 0.15 +0.2

Or see this region's nucleotide sequence