Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02710

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02695 and AO356_02700 are separated by 3 nucleotidesAO356_02700 and AO356_02705 are separated by 8 nucleotidesAO356_02705 and AO356_02710 overlap by 8 nucleotidesAO356_02710 and AO356_02715 overlap by 4 nucleotidesAO356_02715 and AO356_02720 overlap by 4 nucleotides AO356_02695: AO356_02695 - type III secretion system protein SpaR, at 591,860 to 592,663 _02695 AO356_02700: AO356_02700 - type III secretion system protein SpaQ, at 592,667 to 592,921 _02700 AO356_02705: AO356_02705 - type III secretion system protein, at 592,930 to 593,589 _02705 AO356_02710: AO356_02710 - flagellar motor switch/type III secretory pathway protein, at 593,582 to 594,511 _02710 AO356_02715: AO356_02715 - type III secretion effector protein, at 594,508 to 595,377 _02715 AO356_02720: AO356_02720 - type III secretion protein, at 595,374 to 595,829 _02720 Position (kb) 593 594 595Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 592.668 kb on + strandat 592.885 kb on - strand, within AO356_02700at 592.885 kb on - strand, within AO356_02700at 592.905 kb on + strandat 592.906 kb on - strandat 592.906 kb on - strandat 592.931 kb on + strandat 592.931 kb on + strandat 592.932 kb on - strandat 592.949 kb on + strandat 592.949 kb on + strandat 592.950 kb on - strandat 592.950 kb on - strandat 593.108 kb on + strand, within AO356_02705at 593.108 kb on + strand, within AO356_02705at 593.108 kb on + strand, within AO356_02705at 593.109 kb on - strand, within AO356_02705at 593.109 kb on - strand, within AO356_02705at 593.109 kb on - strand, within AO356_02705at 593.109 kb on - strand, within AO356_02705at 593.114 kb on + strand, within AO356_02705at 593.114 kb on + strand, within AO356_02705at 593.115 kb on - strand, within AO356_02705at 593.156 kb on + strand, within AO356_02705at 593.157 kb on - strand, within AO356_02705at 593.276 kb on + strand, within AO356_02705at 593.276 kb on + strand, within AO356_02705at 593.276 kb on + strand, within AO356_02705at 593.277 kb on - strand, within AO356_02705at 593.277 kb on - strand, within AO356_02705at 593.288 kb on + strand, within AO356_02705at 593.288 kb on + strand, within AO356_02705at 593.288 kb on + strand, within AO356_02705at 593.289 kb on - strand, within AO356_02705at 593.289 kb on - strand, within AO356_02705at 593.297 kb on + strand, within AO356_02705at 593.298 kb on - strand, within AO356_02705at 593.347 kb on - strand, within AO356_02705at 593.369 kb on + strand, within AO356_02705at 593.370 kb on - strand, within AO356_02705at 593.370 kb on - strand, within AO356_02705at 593.372 kb on + strand, within AO356_02705at 593.372 kb on + strand, within AO356_02705at 593.513 kb on + strand, within AO356_02705at 593.514 kb on - strand, within AO356_02705at 593.879 kb on + strand, within AO356_02710at 593.879 kb on + strand, within AO356_02710at 593.879 kb on + strand, within AO356_02710at 593.880 kb on - strand, within AO356_02710at 593.917 kb on - strand, within AO356_02710at 594.095 kb on + strand, within AO356_02710at 594.095 kb on + strand, within AO356_02710at 594.259 kb on + strand, within AO356_02710at 594.260 kb on - strand, within AO356_02710at 594.315 kb on + strand, within AO356_02710at 594.384 kb on + strand, within AO356_02710at 594.384 kb on + strand, within AO356_02710at 594.384 kb on + strand, within AO356_02710at 594.657 kb on + strand, within AO356_02715at 594.715 kb on + strand, within AO356_02715at 594.715 kb on + strand, within AO356_02715at 594.716 kb on - strand, within AO356_02715at 594.739 kb on - strand, within AO356_02715at 594.820 kb on + strand, within AO356_02715at 594.821 kb on - strand, within AO356_02715at 595.113 kb on + strand, within AO356_02715at 595.472 kb on - strand, within AO356_02720at 595.472 kb on - strand, within AO356_02720at 595.472 kb on - strand, within AO356_02720at 595.472 kb on - strand, within AO356_02720

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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592,668 + -0.4
592,885 - AO356_02700 0.85 -0.8
592,885 - AO356_02700 0.85 +0.5
592,905 + -1.1
592,906 - +0.1
592,906 - -2.2
592,931 + -3.1
592,931 + -1.5
592,932 - +0.9
592,949 + +1.3
592,949 + +2.2
592,950 - -1.8
592,950 - +1.1
593,108 + AO356_02705 0.27 +0.4
593,108 + AO356_02705 0.27 +0.4
593,108 + AO356_02705 0.27 +1.2
593,109 - AO356_02705 0.27 -1.4
593,109 - AO356_02705 0.27 +1.4
593,109 - AO356_02705 0.27 -0.8
593,109 - AO356_02705 0.27 +1.4
593,114 + AO356_02705 0.28 -1.3
593,114 + AO356_02705 0.28 +2.4
593,115 - AO356_02705 0.28 -1.7
593,156 + AO356_02705 0.34 -1.2
593,157 - AO356_02705 0.34 +0.6
593,276 + AO356_02705 0.52 +2.3
593,276 + AO356_02705 0.52 +0.3
593,276 + AO356_02705 0.52 -0.2
593,277 - AO356_02705 0.53 +0.2
593,277 - AO356_02705 0.53 +0.2
593,288 + AO356_02705 0.54 -0.0
593,288 + AO356_02705 0.54 +2.6
593,288 + AO356_02705 0.54 +1.3
593,289 - AO356_02705 0.54 +0.1
593,289 - AO356_02705 0.54 +0.0
593,297 + AO356_02705 0.56 -0.0
593,298 - AO356_02705 0.56 -0.3
593,347 - AO356_02705 0.63 +0.7
593,369 + AO356_02705 0.67 +1.6
593,370 - AO356_02705 0.67 -0.9
593,370 - AO356_02705 0.67 -0.4
593,372 + AO356_02705 0.67 +0.6
593,372 + AO356_02705 0.67 -2.2
593,513 + AO356_02705 0.88 -0.4
593,514 - AO356_02705 0.88 -1.0
593,879 + AO356_02710 0.32 +0.7
593,879 + AO356_02710 0.32 +2.1
593,879 + AO356_02710 0.32 -0.0
593,880 - AO356_02710 0.32 +0.6
593,917 - AO356_02710 0.36 -2.3
594,095 + AO356_02710 0.55 +0.3
594,095 + AO356_02710 0.55 +1.3
594,259 + AO356_02710 0.73 -0.5
594,260 - AO356_02710 0.73 -1.6
594,315 + AO356_02710 0.79 -1.1
594,384 + AO356_02710 0.86 -0.4
594,384 + AO356_02710 0.86 +0.1
594,384 + AO356_02710 0.86 +0.6
594,657 + AO356_02715 0.17 +1.4
594,715 + AO356_02715 0.24 +1.7
594,715 + AO356_02715 0.24 -0.9
594,716 - AO356_02715 0.24 +0.6
594,739 - AO356_02715 0.27 -2.5
594,820 + AO356_02715 0.36 +0.0
594,821 - AO356_02715 0.36 -0.1
595,113 + AO356_02715 0.70 -1.5
595,472 - AO356_02720 0.21 +0.1
595,472 - AO356_02720 0.21 -0.9
595,472 - AO356_02720 0.21 +1.2
595,472 - AO356_02720 0.21 +0.0

Or see this region's nucleotide sequence