Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01445

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01435 and AO356_01440 are separated by 98 nucleotidesAO356_01440 and AO356_01445 are separated by 76 nucleotidesAO356_01445 and AO356_01450 are separated by 294 nucleotidesAO356_01450 and AO356_01455 overlap by 4 nucleotides AO356_01435: AO356_01435 - LysR family transcriptional regulator, at 328,539 to 329,468 _01435 AO356_01440: AO356_01440 - hypothetical protein, at 329,567 to 330,331 _01440 AO356_01445: AO356_01445 - hypothetical protein, at 330,408 to 330,995 _01445 AO356_01450: AO356_01450 - transposase, at 331,290 to 331,595 _01450 AO356_01455: AO356_01455 - transposase, at 331,592 to 332,428 _01455 Position (kb) 330 331Strain fitness (log2 ratio) -2 -1 0 1 2at 329.533 kb on - strandat 329.789 kb on + strand, within AO356_01440at 329.789 kb on + strand, within AO356_01440at 329.789 kb on + strand, within AO356_01440at 329.790 kb on - strand, within AO356_01440at 329.790 kb on - strand, within AO356_01440at 329.939 kb on + strand, within AO356_01440at 329.940 kb on - strand, within AO356_01440at 329.940 kb on - strand, within AO356_01440at 330.003 kb on + strand, within AO356_01440at 330.004 kb on - strand, within AO356_01440at 330.004 kb on - strand, within AO356_01440at 330.188 kb on + strand, within AO356_01440at 330.188 kb on + strand, within AO356_01440at 330.188 kb on + strand, within AO356_01440at 330.188 kb on + strand, within AO356_01440at 330.188 kb on + strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.189 kb on - strand, within AO356_01440at 330.423 kb on - strandat 330.572 kb on + strand, within AO356_01445at 330.573 kb on - strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.636 kb on + strand, within AO356_01445at 330.637 kb on - strand, within AO356_01445at 330.637 kb on - strand, within AO356_01445at 330.637 kb on - strand, within AO356_01445at 330.637 kb on - strand, within AO356_01445at 330.637 kb on - strand, within AO356_01445at 330.993 kb on + strandat 330.993 kb on + strandat 330.993 kb on + strandat 330.994 kb on - strandat 330.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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329,533 - +0.2
329,789 + AO356_01440 0.29 -0.2
329,789 + AO356_01440 0.29 -0.6
329,789 + AO356_01440 0.29 -0.8
329,790 - AO356_01440 0.29 +0.3
329,790 - AO356_01440 0.29 +0.8
329,939 + AO356_01440 0.49 -0.7
329,940 - AO356_01440 0.49 +1.4
329,940 - AO356_01440 0.49 +0.0
330,003 + AO356_01440 0.57 +0.9
330,004 - AO356_01440 0.57 -0.7
330,004 - AO356_01440 0.57 -0.5
330,188 + AO356_01440 0.81 -0.9
330,188 + AO356_01440 0.81 -0.6
330,188 + AO356_01440 0.81 +0.8
330,188 + AO356_01440 0.81 +0.3
330,188 + AO356_01440 0.81 -0.9
330,189 - AO356_01440 0.81 -2.5
330,189 - AO356_01440 0.81 -0.4
330,189 - AO356_01440 0.81 +0.8
330,189 - AO356_01440 0.81 +0.3
330,189 - AO356_01440 0.81 +2.4
330,189 - AO356_01440 0.81 -1.7
330,423 - +0.8
330,572 + AO356_01445 0.28 +1.7
330,573 - AO356_01445 0.28 +0.5
330,636 + AO356_01445 0.39 -0.2
330,636 + AO356_01445 0.39 -0.7
330,636 + AO356_01445 0.39 +1.1
330,636 + AO356_01445 0.39 +0.5
330,636 + AO356_01445 0.39 +1.6
330,636 + AO356_01445 0.39 -2.1
330,636 + AO356_01445 0.39 -0.0
330,637 - AO356_01445 0.39 -2.1
330,637 - AO356_01445 0.39 +1.2
330,637 - AO356_01445 0.39 -0.8
330,637 - AO356_01445 0.39 -0.6
330,637 - AO356_01445 0.39 -0.2
330,993 + +1.0
330,993 + +1.6
330,993 + -0.2
330,994 - -1.0
330,994 - +0.7

Or see this region's nucleotide sequence