Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0332

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0331 and Ga0059261_0332 are separated by 98 nucleotidesGa0059261_0332 and Ga0059261_0333 are separated by 49 nucleotides Ga0059261_0331: Ga0059261_0331 - carboxynorspermidine dehydrogenase, at 315,506 to 316,711 _0331 Ga0059261_0332: Ga0059261_0332 - Esterase/lipase, at 316,810 to 317,802 _0332 Ga0059261_0333: Ga0059261_0333 - DNA repair photolyase, at 317,852 to 318,922 _0333 Position (kb) 316 317 318Strain fitness (log2 ratio) -2 -1 0 1 2at 316.757 kb on - strandat 316.757 kb on - strandat 316.794 kb on + strandat 316.794 kb on + strandat 316.794 kb on + strandat 316.795 kb on - strandat 316.795 kb on - strandat 316.795 kb on - strandat 316.795 kb on - strandat 316.795 kb on - strandat 316.798 kb on + strandat 316.798 kb on + strandat 316.798 kb on + strandat 316.798 kb on + strandat 316.798 kb on + strandat 316.798 kb on + strandat 316.798 kb on + strandat 316.799 kb on - strandat 316.799 kb on - strandat 316.799 kb on - strandat 316.799 kb on - strandat 316.799 kb on - strandat 316.799 kb on - strandat 316.799 kb on - strandat 316.908 kb on - strandat 316.908 kb on - strandat 317.056 kb on + strand, within Ga0059261_0332at 317.062 kb on + strand, within Ga0059261_0332at 317.062 kb on + strand, within Ga0059261_0332at 317.062 kb on + strand, within Ga0059261_0332at 317.062 kb on + strand, within Ga0059261_0332at 317.062 kb on + strand, within Ga0059261_0332at 317.062 kb on + strand, within Ga0059261_0332at 317.062 kb on + strand, within Ga0059261_0332at 317.062 kb on + strand, within Ga0059261_0332at 317.062 kb on + strand, within Ga0059261_0332at 317.062 kb on + strand, within Ga0059261_0332at 317.063 kb on - strand, within Ga0059261_0332at 317.063 kb on - strand, within Ga0059261_0332at 317.063 kb on - strand, within Ga0059261_0332at 317.128 kb on + strand, within Ga0059261_0332at 317.128 kb on + strand, within Ga0059261_0332at 317.128 kb on + strand, within Ga0059261_0332at 317.128 kb on + strand, within Ga0059261_0332at 317.128 kb on + strand, within Ga0059261_0332at 317.128 kb on + strand, within Ga0059261_0332at 317.128 kb on + strand, within Ga0059261_0332at 317.128 kb on + strand, within Ga0059261_0332at 317.128 kb on + strand, within Ga0059261_0332at 317.128 kb on + strand, within Ga0059261_0332at 317.129 kb on - strand, within Ga0059261_0332at 317.129 kb on - strand, within Ga0059261_0332at 317.129 kb on - strand, within Ga0059261_0332at 317.129 kb on - strand, within Ga0059261_0332at 317.129 kb on - strand, within Ga0059261_0332at 317.129 kb on - strand, within Ga0059261_0332at 317.129 kb on - strand, within Ga0059261_0332at 317.129 kb on - strand, within Ga0059261_0332at 317.129 kb on - strand, within Ga0059261_0332at 317.129 kb on - strand, within Ga0059261_0332at 317.212 kb on + strand, within Ga0059261_0332at 317.212 kb on + strand, within Ga0059261_0332at 317.213 kb on - strand, within Ga0059261_0332at 317.401 kb on + strand, within Ga0059261_0332at 317.401 kb on + strand, within Ga0059261_0332at 317.402 kb on - strand, within Ga0059261_0332at 317.461 kb on + strandat 317.461 kb on + strand, within Ga0059261_0332at 317.462 kb on - strand, within Ga0059261_0332at 317.462 kb on - strand, within Ga0059261_0332at 317.632 kb on + strand, within Ga0059261_0332at 317.679 kb on - strand, within Ga0059261_0332at 317.800 kb on + strandat 317.800 kb on + strandat 317.800 kb on + strandat 317.800 kb on + strandat 317.800 kb on + strandat 317.800 kb on + strandat 317.800 kb on + strandat 317.801 kb on - strandat 317.801 kb on - strandat 317.801 kb on - strandat 317.801 kb on - strandat 317.801 kb on - strandat 317.801 kb on - strandat 317.801 kb on - strandat 317.841 kb on - strandat 317.888 kb on - strandat 318.071 kb on + strand, within Ga0059261_0333at 318.098 kb on + strand, within Ga0059261_0333at 318.098 kb on + strand, within Ga0059261_0333at 318.098 kb on + strand, within Ga0059261_0333at 318.098 kb on + strand, within Ga0059261_0333at 318.099 kb on - strand, within Ga0059261_0333at 318.099 kb on - strand, within Ga0059261_0333at 318.125 kb on + strand, within Ga0059261_0333at 318.126 kb on - strand, within Ga0059261_0333at 318.221 kb on + strand, within Ga0059261_0333at 318.221 kb on + strand, within Ga0059261_0333at 318.221 kb on + strand, within Ga0059261_0333at 318.222 kb on - strand, within Ga0059261_0333at 318.222 kb on - strand, within Ga0059261_0333at 318.304 kb on + strand, within Ga0059261_0333at 318.304 kb on + strand, within Ga0059261_0333at 318.312 kb on + strand, within Ga0059261_0333at 318.536 kb on + strand, within Ga0059261_0333at 318.536 kb on + strand, within Ga0059261_0333at 318.536 kb on + strand, within Ga0059261_0333at 318.536 kb on + strand, within Ga0059261_0333at 318.536 kb on + strand, within Ga0059261_0333at 318.537 kb on - strand, within Ga0059261_0333at 318.537 kb on - strand, within Ga0059261_0333at 318.537 kb on - strand, within Ga0059261_0333at 318.537 kb on - strand, within Ga0059261_0333at 318.589 kb on + strand, within Ga0059261_0333at 318.589 kb on + strand, within Ga0059261_0333at 318.589 kb on + strand, within Ga0059261_0333at 318.589 kb on + strand, within Ga0059261_0333at 318.589 kb on + strand, within Ga0059261_0333at 318.589 kb on + strand, within Ga0059261_0333at 318.589 kb on + strand, within Ga0059261_0333at 318.590 kb on - strand, within Ga0059261_0333at 318.590 kb on - strand, within Ga0059261_0333at 318.590 kb on - strand, within Ga0059261_0333at 318.590 kb on - strand, within Ga0059261_0333at 318.632 kb on + strand, within Ga0059261_0333at 318.632 kb on + strand, within Ga0059261_0333at 318.632 kb on + strand, within Ga0059261_0333at 318.632 kb on + strand, within Ga0059261_0333at 318.633 kb on - strand, within Ga0059261_0333at 318.633 kb on - strand, within Ga0059261_0333

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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316,757 - +0.8
316,757 - +0.2
316,794 + -0.9
316,794 + -0.1
316,794 + -0.1
316,795 - -0.7
316,795 - +0.9
316,795 - +0.1
316,795 - +0.2
316,795 - +0.3
316,798 + -0.3
316,798 + -0.2
316,798 + -1.6
316,798 + -0.2
316,798 + -0.4
316,798 + -0.2
316,798 + -0.3
316,799 - +0.1
316,799 - +0.4
316,799 - +0.7
316,799 - -0.2
316,799 - +0.8
316,799 - +0.7
316,799 - +0.5
316,908 - -0.8
316,908 - +0.2
317,056 + Ga0059261_0332 0.25 -0.3
317,062 + Ga0059261_0332 0.25 +0.2
317,062 + Ga0059261_0332 0.25 +1.2
317,062 + Ga0059261_0332 0.25 +1.3
317,062 + Ga0059261_0332 0.25 -0.7
317,062 + Ga0059261_0332 0.25 +0.6
317,062 + Ga0059261_0332 0.25 +0.1
317,062 + Ga0059261_0332 0.25 +0.2
317,062 + Ga0059261_0332 0.25 -0.4
317,062 + Ga0059261_0332 0.25 +0.7
317,062 + Ga0059261_0332 0.25 -0.3
317,063 - Ga0059261_0332 0.25 +0.3
317,063 - Ga0059261_0332 0.25 +0.8
317,063 - Ga0059261_0332 0.25 +0.4
317,128 + Ga0059261_0332 0.32 +0.6
317,128 + Ga0059261_0332 0.32 +0.7
317,128 + Ga0059261_0332 0.32 +0.6
317,128 + Ga0059261_0332 0.32 +1.0
317,128 + Ga0059261_0332 0.32 +0.3
317,128 + Ga0059261_0332 0.32 +0.8
317,128 + Ga0059261_0332 0.32 -0.1
317,128 + Ga0059261_0332 0.32 +1.1
317,128 + Ga0059261_0332 0.32 +0.7
317,128 + Ga0059261_0332 0.32 +0.3
317,129 - Ga0059261_0332 0.32 -0.5
317,129 - Ga0059261_0332 0.32 +0.4
317,129 - Ga0059261_0332 0.32 +0.4
317,129 - Ga0059261_0332 0.32 +0.4
317,129 - Ga0059261_0332 0.32 +1.3
317,129 - Ga0059261_0332 0.32 +0.1
317,129 - Ga0059261_0332 0.32 +1.1
317,129 - Ga0059261_0332 0.32 +0.8
317,129 - Ga0059261_0332 0.32 -0.0
317,129 - Ga0059261_0332 0.32 +0.9
317,212 + Ga0059261_0332 0.40 +0.5
317,212 + Ga0059261_0332 0.40 +0.8
317,213 - Ga0059261_0332 0.41 +0.4
317,401 + Ga0059261_0332 0.60 -0.4
317,401 + Ga0059261_0332 0.60 +0.2
317,402 - Ga0059261_0332 0.60 +0.4
317,461 + -0.6
317,461 + Ga0059261_0332 0.66 +0.7
317,462 - Ga0059261_0332 0.66 +1.0
317,462 - Ga0059261_0332 0.66 +0.3
317,632 + Ga0059261_0332 0.83 +1.3
317,679 - Ga0059261_0332 0.88 +0.7
317,800 + -0.3
317,800 + +0.4
317,800 + -0.4
317,800 + -1.3
317,800 + -0.2
317,800 + +1.0
317,800 + -0.2
317,801 - +0.7
317,801 - +0.3
317,801 - +0.3
317,801 - +0.3
317,801 - -2.0
317,801 - +0.2
317,801 - -1.6
317,841 - +0.1
317,888 - +1.0
318,071 + Ga0059261_0333 0.20 +2.0
318,098 + Ga0059261_0333 0.23 +0.1
318,098 + Ga0059261_0333 0.23 +0.8
318,098 + Ga0059261_0333 0.23 -0.3
318,098 + Ga0059261_0333 0.23 -0.1
318,099 - Ga0059261_0333 0.23 +0.2
318,099 - Ga0059261_0333 0.23 +1.1
318,125 + Ga0059261_0333 0.25 -0.3
318,126 - Ga0059261_0333 0.26 +0.9
318,221 + Ga0059261_0333 0.34 -0.0
318,221 + Ga0059261_0333 0.34 -0.0
318,221 + Ga0059261_0333 0.34 +0.4
318,222 - Ga0059261_0333 0.35 +0.3
318,222 - Ga0059261_0333 0.35 +0.3
318,304 + Ga0059261_0333 0.42 -1.0
318,304 + Ga0059261_0333 0.42 -0.4
318,312 + Ga0059261_0333 0.43 +0.0
318,536 + Ga0059261_0333 0.64 +0.9
318,536 + Ga0059261_0333 0.64 +0.5
318,536 + Ga0059261_0333 0.64 +0.3
318,536 + Ga0059261_0333 0.64 -0.7
318,536 + Ga0059261_0333 0.64 -0.9
318,537 - Ga0059261_0333 0.64 +1.3
318,537 - Ga0059261_0333 0.64 -0.3
318,537 - Ga0059261_0333 0.64 +0.5
318,537 - Ga0059261_0333 0.64 -0.2
318,589 + Ga0059261_0333 0.69 +0.2
318,589 + Ga0059261_0333 0.69 +0.5
318,589 + Ga0059261_0333 0.69 +0.4
318,589 + Ga0059261_0333 0.69 +0.9
318,589 + Ga0059261_0333 0.69 -0.1
318,589 + Ga0059261_0333 0.69 +0.7
318,589 + Ga0059261_0333 0.69 +0.2
318,590 - Ga0059261_0333 0.69 +0.2
318,590 - Ga0059261_0333 0.69 +0.1
318,590 - Ga0059261_0333 0.69 +0.2
318,590 - Ga0059261_0333 0.69 -0.0
318,632 + Ga0059261_0333 0.73 +0.4
318,632 + Ga0059261_0333 0.73 +0.3
318,632 + Ga0059261_0333 0.73 +0.3
318,632 + Ga0059261_0333 0.73 -0.3
318,633 - Ga0059261_0333 0.73 +0.5
318,633 - Ga0059261_0333 0.73 -0.7

Or see this region's nucleotide sequence