Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24520 and BWI76_RS24525 are separated by 8 nucleotides BWI76_RS24525 and BWI76_RS24530 are separated by 151 nucleotides BWI76_RS24530 and BWI76_RS24535 are separated by 46 nucleotides
BWI76_RS24520: BWI76_RS24520 - urease accessory protein UreF, at 5,111,823 to 5,112,497
_RS24520
BWI76_RS24525: BWI76_RS24525 - urease accessory protein UreG, at 5,112,506 to 5,113,123
_RS24525
BWI76_RS24530: BWI76_RS24530 - cytosine/purines uracil thiamine allantoin permease, at 5,113,275 to 5,114,882
_RS24530
BWI76_RS24535: BWI76_RS24535 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 5,114,929 to 5,115,942
_RS24535
Position (kb)
5113
5114
5115 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5112.392 kb on - strand, within BWI76_RS24520 at 5112.511 kb on - strand at 5112.582 kb on - strand, within BWI76_RS24525 at 5112.586 kb on + strand, within BWI76_RS24525 at 5112.594 kb on - strand, within BWI76_RS24525 at 5112.687 kb on - strand, within BWI76_RS24525 at 5112.857 kb on - strand, within BWI76_RS24525 at 5113.124 kb on + strand at 5113.124 kb on + strand at 5113.140 kb on + strand at 5113.140 kb on + strand at 5113.234 kb on - strand at 5113.241 kb on + strand at 5113.313 kb on + strand at 5113.329 kb on - strand at 5113.348 kb on + strand at 5113.356 kb on - strand at 5113.392 kb on - strand at 5113.539 kb on - strand, within BWI76_RS24530 at 5113.570 kb on - strand, within BWI76_RS24530 at 5113.570 kb on - strand, within BWI76_RS24530 at 5113.581 kb on - strand, within BWI76_RS24530 at 5113.721 kb on + strand, within BWI76_RS24530 at 5113.799 kb on + strand, within BWI76_RS24530 at 5113.941 kb on - strand, within BWI76_RS24530 at 5113.945 kb on + strand, within BWI76_RS24530 at 5113.953 kb on - strand, within BWI76_RS24530 at 5114.064 kb on + strand, within BWI76_RS24530 at 5114.064 kb on + strand, within BWI76_RS24530 at 5114.148 kb on + strand, within BWI76_RS24530 at 5114.150 kb on + strand, within BWI76_RS24530 at 5114.150 kb on + strand, within BWI76_RS24530 at 5114.156 kb on - strand at 5114.174 kb on - strand, within BWI76_RS24530 at 5114.229 kb on - strand, within BWI76_RS24530 at 5114.372 kb on - strand, within BWI76_RS24530 at 5114.381 kb on + strand, within BWI76_RS24530 at 5114.389 kb on - strand, within BWI76_RS24530 at 5114.428 kb on + strand, within BWI76_RS24530 at 5114.565 kb on + strand, within BWI76_RS24530 at 5114.710 kb on + strand, within BWI76_RS24530 at 5114.718 kb on - strand, within BWI76_RS24530 at 5114.757 kb on - strand at 5114.762 kb on - strand at 5114.864 kb on + strand at 5114.864 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 5,112,392 - BWI76_RS24520 0.84 -3.5 5,112,511 - -1.2 5,112,582 - BWI76_RS24525 0.12 -2.8 5,112,586 + BWI76_RS24525 0.13 -1.4 5,112,594 - BWI76_RS24525 0.14 -3.7 5,112,687 - BWI76_RS24525 0.29 -1.7 5,112,857 - BWI76_RS24525 0.57 -2.4 5,113,124 + -1.9 5,113,124 + -2.2 5,113,140 + -1.3 5,113,140 + -1.5 5,113,234 - -0.9 5,113,241 + -0.4 5,113,313 + -0.2 5,113,329 - -0.6 5,113,348 + +0.2 5,113,356 - -0.4 5,113,392 - +0.0 5,113,539 - BWI76_RS24530 0.16 +0.1 5,113,570 - BWI76_RS24530 0.18 -0.5 5,113,570 - BWI76_RS24530 0.18 -0.1 5,113,581 - BWI76_RS24530 0.19 -0.7 5,113,721 + BWI76_RS24530 0.28 -0.2 5,113,799 + BWI76_RS24530 0.33 -0.3 5,113,941 - BWI76_RS24530 0.41 -1.0 5,113,945 + BWI76_RS24530 0.42 -0.9 5,113,953 - BWI76_RS24530 0.42 -0.6 5,114,064 + BWI76_RS24530 0.49 -0.6 5,114,064 + BWI76_RS24530 0.49 -0.9 5,114,148 + BWI76_RS24530 0.54 -0.5 5,114,150 + BWI76_RS24530 0.54 -0.4 5,114,150 + BWI76_RS24530 0.54 +0.1 5,114,156 - -0.7 5,114,174 - BWI76_RS24530 0.56 -2.1 5,114,229 - BWI76_RS24530 0.59 -1.4 5,114,372 - BWI76_RS24530 0.68 +0.1 5,114,381 + BWI76_RS24530 0.69 -0.7 5,114,389 - BWI76_RS24530 0.69 -1.1 5,114,428 + BWI76_RS24530 0.72 +0.6 5,114,565 + BWI76_RS24530 0.80 -0.5 5,114,710 + BWI76_RS24530 0.89 -1.0 5,114,718 - BWI76_RS24530 0.90 +1.7 5,114,757 - -0.6 5,114,762 - +2.6 5,114,864 + -0.8 5,114,864 + +0.5
Or see this region's nucleotide sequence