Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24490 and BWI76_RS24495 are separated by 258 nucleotides BWI76_RS24495 and BWI76_RS24500 are separated by 9 nucleotides BWI76_RS24500 and BWI76_RS24505 are separated by 9 nucleotides BWI76_RS24505 and BWI76_RS24510 overlap by 8 nucleotides
BWI76_RS24490: BWI76_RS24490 - glycerol-3-phosphate acyltransferase, at 5,107,301 to 5,107,921
_RS24490
BWI76_RS24495: BWI76_RS24495 - urease accessory protein, at 5,108,180 to 5,109,004
_RS24495
BWI76_RS24500: BWI76_RS24500 - urease subunit gamma, at 5,109,014 to 5,109,316
_RS24500
BWI76_RS24505: BWI76_RS24505 - urease subunit beta, at 5,109,326 to 5,109,646
_RS24505
BWI76_RS24510: BWI76_RS24510 - urease subunit alpha, at 5,109,639 to 5,111,342
_RS24510
Position (kb) 5108
5109
5110 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5107.203 kb on + strand at 5107.217 kb on - strand at 5107.224 kb on + strand at 5107.224 kb on + strand at 5107.232 kb on - strand at 5107.253 kb on - strand at 5107.268 kb on + strand at 5107.322 kb on - strand at 5107.577 kb on + strand, within BWI76_RS24490 at 5107.656 kb on + strand, within BWI76_RS24490 at 5107.716 kb on + strand, within BWI76_RS24490 at 5107.736 kb on - strand, within BWI76_RS24490 at 5107.764 kb on - strand, within BWI76_RS24490 at 5107.764 kb on - strand, within BWI76_RS24490 at 5107.764 kb on - strand, within BWI76_RS24490 at 5107.771 kb on + strand at 5107.951 kb on - strand at 5108.138 kb on - strand at 5108.396 kb on - strand, within BWI76_RS24495 at 5108.498 kb on - strand, within BWI76_RS24495 at 5108.527 kb on + strand, within BWI76_RS24495 at 5108.603 kb on + strand, within BWI76_RS24495 at 5108.628 kb on - strand, within BWI76_RS24495 at 5108.693 kb on + strand, within BWI76_RS24495 at 5108.772 kb on - strand, within BWI76_RS24495 at 5108.837 kb on - strand, within BWI76_RS24495 at 5108.999 kb on + strand at 5109.225 kb on - strand, within BWI76_RS24500 at 5109.246 kb on + strand, within BWI76_RS24500 at 5109.264 kb on - strand, within BWI76_RS24500 at 5109.279 kb on + strand, within BWI76_RS24500 at 5109.365 kb on + strand, within BWI76_RS24505 at 5109.613 kb on + strand, within BWI76_RS24505
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 5,107,203 + +0.0 5,107,217 - -0.2 5,107,224 + -0.1 5,107,224 + -0.9 5,107,232 - +0.5 5,107,253 - -0.6 5,107,268 + -0.5 5,107,322 - -0.6 5,107,577 + BWI76_RS24490 0.44 -0.2 5,107,656 + BWI76_RS24490 0.57 -0.9 5,107,716 + BWI76_RS24490 0.67 -0.0 5,107,736 - BWI76_RS24490 0.70 +0.6 5,107,764 - BWI76_RS24490 0.75 -0.3 5,107,764 - BWI76_RS24490 0.75 -0.0 5,107,764 - BWI76_RS24490 0.75 -0.0 5,107,771 + -1.3 5,107,951 - +0.2 5,108,138 - -2.5 5,108,396 - BWI76_RS24495 0.26 -1.2 5,108,498 - BWI76_RS24495 0.39 -3.3 5,108,527 + BWI76_RS24495 0.42 -2.1 5,108,603 + BWI76_RS24495 0.51 -3.0 5,108,628 - BWI76_RS24495 0.54 -3.2 5,108,693 + BWI76_RS24495 0.62 -1.2 5,108,772 - BWI76_RS24495 0.72 -3.9 5,108,837 - BWI76_RS24495 0.80 -1.8 5,108,999 + +0.7 5,109,225 - BWI76_RS24500 0.70 -0.7 5,109,246 + BWI76_RS24500 0.77 -2.1 5,109,264 - BWI76_RS24500 0.83 -0.4 5,109,279 + BWI76_RS24500 0.87 -2.7 5,109,365 + BWI76_RS24505 0.12 -3.0 5,109,613 + BWI76_RS24505 0.89 -2.3
Or see this region's nucleotide sequence