Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30225 and AO356_30230 are separated by 16 nucleotides AO356_30230 and AO356_30235 are separated by 189 nucleotides AO356_30235 and AO356_30240 are separated by 315 nucleotides
AO356_30225: AO356_30225 - choline dehydrogenase, at 7,055,146 to 7,056,786
_30225
AO356_30230: AO356_30230 - transmembrane reductase oxidoreductase, at 7,056,803 to 7,057,477
_30230
AO356_30235: AO356_30235 - LysR family transcriptional regulator, at 7,057,667 to 7,058,560
_30235
AO356_30240: AO356_30240 - transcriptional regulator, at 7,058,876 to 7,060,006
_30240
Position (kb) 7057
7058
7059 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 7056.690 kb on + strand at 7056.770 kb on + strand at 7056.771 kb on - strand at 7056.777 kb on - strand at 7056.789 kb on - strand at 7056.804 kb on + strand at 7056.889 kb on - strand, within AO356_30230 at 7056.923 kb on + strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.926 kb on - strand, within AO356_30230 at 7057.004 kb on - strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.044 kb on - strand, within AO356_30230 at 7057.067 kb on + strand, within AO356_30230 at 7057.067 kb on + strand, within AO356_30230 at 7057.552 kb on + strand at 7057.552 kb on + strand at 7057.552 kb on + strand at 7057.553 kb on - strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.640 kb on + strand at 7057.654 kb on + strand at 7057.682 kb on + strand at 7057.682 kb on + strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.809 kb on + strand, within AO356_30235 at 7057.809 kb on + strand, within AO356_30235 at 7057.810 kb on - strand, within AO356_30235 at 7057.810 kb on - strand, within AO356_30235 at 7057.810 kb on - strand, within AO356_30235 at 7057.874 kb on - strand, within AO356_30235 at 7057.874 kb on - strand, within AO356_30235 at 7058.035 kb on - strand, within AO356_30235 at 7058.035 kb on - strand, within AO356_30235 at 7058.035 kb on - strand, within AO356_30235 at 7058.040 kb on + strand, within AO356_30235 at 7058.041 kb on - strand, within AO356_30235 at 7058.143 kb on + strand, within AO356_30235 at 7058.143 kb on + strand, within AO356_30235 at 7058.143 kb on + strand, within AO356_30235 at 7058.144 kb on - strand, within AO356_30235 at 7058.144 kb on - strand, within AO356_30235 at 7058.145 kb on + strand, within AO356_30235 at 7058.145 kb on + strand, within AO356_30235 at 7058.145 kb on + strand, within AO356_30235 at 7058.146 kb on - strand, within AO356_30235 at 7058.146 kb on - strand, within AO356_30235 at 7058.146 kb on - strand, within AO356_30235 at 7058.186 kb on + strand, within AO356_30235 at 7058.187 kb on - strand, within AO356_30235 at 7058.242 kb on + strand, within AO356_30235 at 7058.242 kb on + strand, within AO356_30235 at 7058.243 kb on - strand, within AO356_30235 at 7058.243 kb on - strand, within AO356_30235 at 7058.244 kb on + strand, within AO356_30235 at 7058.245 kb on - strand, within AO356_30235 at 7058.245 kb on - strand, within AO356_30235 at 7058.245 kb on - strand, within AO356_30235 at 7058.248 kb on + strand, within AO356_30235 at 7058.248 kb on + strand, within AO356_30235 at 7058.248 kb on + strand, within AO356_30235 at 7058.249 kb on - strand, within AO356_30235 at 7058.249 kb on - strand, within AO356_30235 at 7058.338 kb on - strand, within AO356_30235 at 7058.338 kb on - strand, within AO356_30235 at 7058.393 kb on + strand, within AO356_30235 at 7058.393 kb on + strand, within AO356_30235 at 7058.394 kb on - strand, within AO356_30235 at 7058.394 kb on - strand, within AO356_30235 at 7058.394 kb on - strand, within AO356_30235 at 7058.489 kb on + strand at 7058.489 kb on + strand at 7058.492 kb on + strand at 7058.493 kb on - strand at 7058.558 kb on + strand at 7058.600 kb on + strand at 7058.616 kb on + strand at 7058.641 kb on + strand at 7058.641 kb on + strand at 7058.730 kb on - strand at 7058.768 kb on + strand at 7058.769 kb on - strand at 7058.769 kb on - strand at 7058.769 kb on - strand at 7058.769 kb on - strand at 7058.788 kb on + strand at 7058.788 kb on + strand at 7058.788 kb on + strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.795 kb on + strand at 7058.796 kb on - strand at 7058.818 kb on + strand at 7058.819 kb on - strand at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.253 kb on + strand, within AO356_30240 at 7059.254 kb on - strand, within AO356_30240 at 7059.254 kb on - strand, within AO356_30240 at 7059.299 kb on + strand, within AO356_30240 at 7059.299 kb on + strand, within AO356_30240 at 7059.300 kb on - strand, within AO356_30240 at 7059.300 kb on - strand, within AO356_30240 at 7059.377 kb on + strand, within AO356_30240 at 7059.496 kb on + strand, within AO356_30240 at 7059.496 kb on + strand, within AO356_30240 at 7059.496 kb on + strand, within AO356_30240 at 7059.497 kb on - strand, within AO356_30240 at 7059.497 kb on - strand, within AO356_30240 at 7059.515 kb on + strand, within AO356_30240 at 7059.516 kb on - strand, within AO356_30240
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 7,056,690 + +0.8 7,056,770 + -0.6 7,056,771 - -0.4 7,056,777 - -0.7 7,056,789 - +0.6 7,056,804 + -0.1 7,056,889 - AO356_30230 0.13 -0.4 7,056,923 + AO356_30230 0.18 -1.0 7,056,924 - AO356_30230 0.18 +0.3 7,056,924 - AO356_30230 0.18 -3.0 7,056,924 - AO356_30230 0.18 -0.1 7,056,925 + AO356_30230 0.18 +0.2 7,056,925 + AO356_30230 0.18 -0.8 7,056,925 + AO356_30230 0.18 +0.4 7,056,925 + AO356_30230 0.18 +1.0 7,056,925 + AO356_30230 0.18 +1.1 7,056,926 - AO356_30230 0.18 +1.5 7,057,004 - AO356_30230 0.30 -0.8 7,057,043 + AO356_30230 0.36 +0.0 7,057,043 + AO356_30230 0.36 +1.0 7,057,043 + AO356_30230 0.36 -1.0 7,057,043 + AO356_30230 0.36 -1.2 7,057,043 + AO356_30230 0.36 +1.3 7,057,044 - AO356_30230 0.36 +2.2 7,057,067 + AO356_30230 0.39 -0.3 7,057,067 + AO356_30230 0.39 -0.9 7,057,552 + +0.2 7,057,552 + +0.3 7,057,552 + -0.2 7,057,553 - +0.8 7,057,606 + -0.4 7,057,606 + +0.9 7,057,606 + -1.2 7,057,606 + +1.1 7,057,607 - +1.5 7,057,607 - +0.1 7,057,607 - +0.4 7,057,607 - +0.6 7,057,607 - -1.6 7,057,607 - +1.5 7,057,607 - +0.6 7,057,607 - -0.2 7,057,607 - -0.7 7,057,640 + -2.0 7,057,654 + -0.1 7,057,682 + -2.2 7,057,682 + -0.4 7,057,683 - +0.8 7,057,683 - -0.2 7,057,683 - +1.3 7,057,683 - +1.3 7,057,777 + AO356_30235 0.12 -1.9 7,057,777 + AO356_30235 0.12 +1.7 7,057,777 + AO356_30235 0.12 +1.2 7,057,777 + AO356_30235 0.12 -3.1 7,057,777 + AO356_30235 0.12 +2.3 7,057,777 + AO356_30235 0.12 +1.1 7,057,778 - AO356_30235 0.12 +1.0 7,057,778 - AO356_30235 0.12 +1.3 7,057,778 - AO356_30235 0.12 -0.6 7,057,809 + AO356_30235 0.16 -0.8 7,057,809 + AO356_30235 0.16 +0.4 7,057,810 - AO356_30235 0.16 -0.6 7,057,810 - AO356_30235 0.16 -0.1 7,057,810 - AO356_30235 0.16 +0.6 7,057,874 - AO356_30235 0.23 -2.9 7,057,874 - AO356_30235 0.23 +0.3 7,058,035 - AO356_30235 0.41 +0.7 7,058,035 - AO356_30235 0.41 -1.0 7,058,035 - AO356_30235 0.41 -0.4 7,058,040 + AO356_30235 0.42 -2.1 7,058,041 - AO356_30235 0.42 -0.6 7,058,143 + AO356_30235 0.53 -1.1 7,058,143 + AO356_30235 0.53 -1.0 7,058,143 + AO356_30235 0.53 -0.1 7,058,144 - AO356_30235 0.53 -1.0 7,058,144 - AO356_30235 0.53 -0.4 7,058,145 + AO356_30235 0.53 +1.5 7,058,145 + AO356_30235 0.53 +1.3 7,058,145 + AO356_30235 0.53 -1.7 7,058,146 - AO356_30235 0.54 -1.6 7,058,146 - AO356_30235 0.54 -1.0 7,058,146 - AO356_30235 0.54 -2.2 7,058,186 + AO356_30235 0.58 -0.2 7,058,187 - AO356_30235 0.58 +3.0 7,058,242 + AO356_30235 0.64 +0.0 7,058,242 + AO356_30235 0.64 -1.0 7,058,243 - AO356_30235 0.64 +1.4 7,058,243 - AO356_30235 0.64 -0.0 7,058,244 + AO356_30235 0.65 -0.2 7,058,245 - AO356_30235 0.65 +2.4 7,058,245 - AO356_30235 0.65 -1.0 7,058,245 - AO356_30235 0.65 +0.4 7,058,248 + AO356_30235 0.65 -0.2 7,058,248 + AO356_30235 0.65 -0.8 7,058,248 + AO356_30235 0.65 +0.3 7,058,249 - AO356_30235 0.65 +0.6 7,058,249 - AO356_30235 0.65 -2.2 7,058,338 - AO356_30235 0.75 -0.3 7,058,338 - AO356_30235 0.75 +0.4 7,058,393 + AO356_30235 0.81 +0.4 7,058,393 + AO356_30235 0.81 -2.2 7,058,394 - AO356_30235 0.81 -0.9 7,058,394 - AO356_30235 0.81 +2.7 7,058,394 - AO356_30235 0.81 +2.0 7,058,489 + -1.6 7,058,489 + -1.4 7,058,492 + +0.6 7,058,493 - +1.1 7,058,558 + -1.4 7,058,600 + -1.6 7,058,616 + +0.6 7,058,641 + +0.0 7,058,641 + -0.9 7,058,730 - -1.9 7,058,768 + +0.9 7,058,769 - +0.7 7,058,769 - +0.1 7,058,769 - -2.4 7,058,769 - +0.3 7,058,788 + +1.0 7,058,788 + +0.3 7,058,788 + +2.1 7,058,789 - -1.0 7,058,789 - -2.7 7,058,789 - -0.9 7,058,789 - -0.2 7,058,789 - -1.0 7,058,789 - -0.4 7,058,789 - -0.2 7,058,789 - +0.8 7,058,795 + -0.2 7,058,796 - +1.2 7,058,818 + +1.4 7,058,819 - -1.0 7,059,251 + AO356_30240 0.33 +0.7 7,059,251 + AO356_30240 0.33 +2.3 7,059,251 + AO356_30240 0.33 +0.4 7,059,251 + AO356_30240 0.33 +0.3 7,059,251 + AO356_30240 0.33 +0.7 7,059,251 + AO356_30240 0.33 +2.4 7,059,251 + AO356_30240 0.33 -0.7 7,059,251 + AO356_30240 0.33 +0.9 7,059,252 - AO356_30240 0.33 +1.8 7,059,252 - AO356_30240 0.33 -2.6 7,059,252 - AO356_30240 0.33 +0.7 7,059,252 - AO356_30240 0.33 +1.0 7,059,252 - AO356_30240 0.33 +0.6 7,059,252 - AO356_30240 0.33 -0.2 7,059,253 + AO356_30240 0.33 -0.1 7,059,254 - AO356_30240 0.33 +1.8 7,059,254 - AO356_30240 0.33 -2.9 7,059,299 + AO356_30240 0.37 +1.8 7,059,299 + AO356_30240 0.37 +1.8 7,059,300 - AO356_30240 0.37 +0.4 7,059,300 - AO356_30240 0.37 +0.4 7,059,377 + AO356_30240 0.44 -1.7 7,059,496 + AO356_30240 0.55 +0.9 7,059,496 + AO356_30240 0.55 -2.4 7,059,496 + AO356_30240 0.55 +0.7 7,059,497 - AO356_30240 0.55 +2.5 7,059,497 - AO356_30240 0.55 +0.9 7,059,515 + AO356_30240 0.56 +1.0 7,059,516 - AO356_30240 0.57 -1.0
Or see this region's nucleotide sequence