Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30220 and AO356_30225 are separated by 72 nucleotides AO356_30225 and AO356_30230 are separated by 16 nucleotides AO356_30230 and AO356_30235 are separated by 189 nucleotides
AO356_30220: AO356_30220 - aldehyde dehydrogenase, at 7,053,622 to 7,055,073
_30220
AO356_30225: AO356_30225 - choline dehydrogenase, at 7,055,146 to 7,056,786
_30225
AO356_30230: AO356_30230 - transmembrane reductase oxidoreductase, at 7,056,803 to 7,057,477
_30230
AO356_30235: AO356_30235 - LysR family transcriptional regulator, at 7,057,667 to 7,058,560
_30235
Position (kb) 7055
7056
7057 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 7054.279 kb on - strand, within AO356_30220 at 7054.577 kb on - strand, within AO356_30220 at 7054.584 kb on + strand, within AO356_30220 at 7054.584 kb on + strand, within AO356_30220 at 7054.584 kb on + strand, within AO356_30220 at 7054.584 kb on + strand, within AO356_30220 at 7054.604 kb on + strand, within AO356_30220 at 7054.604 kb on + strand, within AO356_30220 at 7054.604 kb on + strand, within AO356_30220 at 7054.605 kb on - strand, within AO356_30220 at 7054.718 kb on + strand, within AO356_30220 at 7054.719 kb on - strand, within AO356_30220 at 7054.749 kb on + strand, within AO356_30220 at 7054.749 kb on + strand, within AO356_30220 at 7054.749 kb on + strand, within AO356_30220 at 7054.749 kb on + strand, within AO356_30220 at 7054.749 kb on + strand, within AO356_30220 at 7054.749 kb on + strand, within AO356_30220 at 7054.749 kb on + strand, within AO356_30220 at 7054.750 kb on - strand, within AO356_30220 at 7054.750 kb on - strand, within AO356_30220 at 7054.750 kb on - strand, within AO356_30220 at 7054.750 kb on - strand, within AO356_30220 at 7054.819 kb on + strand, within AO356_30220 at 7054.820 kb on - strand, within AO356_30220 at 7054.845 kb on - strand, within AO356_30220 at 7054.902 kb on - strand, within AO356_30220 at 7054.902 kb on - strand, within AO356_30220 at 7054.902 kb on - strand, within AO356_30220 at 7055.052 kb on - strand at 7055.052 kb on - strand at 7055.408 kb on + strand, within AO356_30225 at 7055.408 kb on + strand, within AO356_30225 at 7055.409 kb on - strand, within AO356_30225 at 7055.409 kb on - strand, within AO356_30225 at 7055.414 kb on + strand, within AO356_30225 at 7055.415 kb on - strand, within AO356_30225 at 7055.415 kb on - strand, within AO356_30225 at 7055.415 kb on - strand, within AO356_30225 at 7055.418 kb on + strand, within AO356_30225 at 7055.418 kb on + strand, within AO356_30225 at 7055.418 kb on + strand, within AO356_30225 at 7055.418 kb on + strand, within AO356_30225 at 7055.418 kb on + strand, within AO356_30225 at 7055.419 kb on - strand, within AO356_30225 at 7055.540 kb on + strand, within AO356_30225 at 7055.540 kb on + strand, within AO356_30225 at 7055.637 kb on - strand, within AO356_30225 at 7055.735 kb on + strand, within AO356_30225 at 7055.735 kb on + strand, within AO356_30225 at 7055.736 kb on - strand, within AO356_30225 at 7055.736 kb on - strand, within AO356_30225 at 7055.758 kb on - strand, within AO356_30225 at 7055.795 kb on + strand, within AO356_30225 at 7055.848 kb on + strand, within AO356_30225 at 7055.848 kb on + strand, within AO356_30225 at 7055.849 kb on - strand, within AO356_30225 at 7055.903 kb on + strand, within AO356_30225 at 7055.904 kb on - strand, within AO356_30225 at 7055.904 kb on - strand, within AO356_30225 at 7056.059 kb on + strand, within AO356_30225 at 7056.059 kb on + strand, within AO356_30225 at 7056.059 kb on + strand, within AO356_30225 at 7056.059 kb on + strand, within AO356_30225 at 7056.060 kb on - strand, within AO356_30225 at 7056.060 kb on - strand, within AO356_30225 at 7056.064 kb on - strand, within AO356_30225 at 7056.064 kb on - strand, within AO356_30225 at 7056.064 kb on - strand, within AO356_30225 at 7056.094 kb on + strand, within AO356_30225 at 7056.094 kb on + strand, within AO356_30225 at 7056.095 kb on - strand, within AO356_30225 at 7056.122 kb on - strand, within AO356_30225 at 7056.244 kb on + strand, within AO356_30225 at 7056.244 kb on + strand, within AO356_30225 at 7056.244 kb on + strand, within AO356_30225 at 7056.310 kb on + strand, within AO356_30225 at 7056.313 kb on - strand, within AO356_30225 at 7056.321 kb on - strand, within AO356_30225 at 7056.324 kb on + strand, within AO356_30225 at 7056.325 kb on - strand, within AO356_30225 at 7056.325 kb on - strand, within AO356_30225 at 7056.325 kb on - strand, within AO356_30225 at 7056.380 kb on + strand, within AO356_30225 at 7056.422 kb on + strand, within AO356_30225 at 7056.423 kb on - strand, within AO356_30225 at 7056.505 kb on + strand, within AO356_30225 at 7056.505 kb on + strand, within AO356_30225 at 7056.505 kb on + strand, within AO356_30225 at 7056.557 kb on + strand, within AO356_30225 at 7056.557 kb on + strand, within AO356_30225 at 7056.558 kb on - strand, within AO356_30225 at 7056.558 kb on - strand, within AO356_30225 at 7056.626 kb on + strand at 7056.651 kb on + strand at 7056.652 kb on - strand at 7056.690 kb on + strand at 7056.770 kb on + strand at 7056.771 kb on - strand at 7056.777 kb on - strand at 7056.789 kb on - strand at 7056.804 kb on + strand at 7056.889 kb on - strand, within AO356_30230 at 7056.923 kb on + strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.926 kb on - strand, within AO356_30230 at 7057.004 kb on - strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.044 kb on - strand, within AO356_30230 at 7057.067 kb on + strand, within AO356_30230 at 7057.067 kb on + strand, within AO356_30230 at 7057.552 kb on + strand at 7057.552 kb on + strand at 7057.552 kb on + strand at 7057.553 kb on - strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.640 kb on + strand at 7057.654 kb on + strand at 7057.682 kb on + strand at 7057.682 kb on + strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 7,054,279 - AO356_30220 0.45 -2.2 7,054,577 - AO356_30220 0.66 +0.9 7,054,584 + AO356_30220 0.66 +0.6 7,054,584 + AO356_30220 0.66 +1.3 7,054,584 + AO356_30220 0.66 +0.9 7,054,584 + AO356_30220 0.66 +2.1 7,054,604 + AO356_30220 0.68 -0.5 7,054,604 + AO356_30220 0.68 +1.4 7,054,604 + AO356_30220 0.68 +0.2 7,054,605 - AO356_30220 0.68 -0.4 7,054,718 + AO356_30220 0.75 +2.2 7,054,719 - AO356_30220 0.76 +0.3 7,054,749 + AO356_30220 0.78 +2.0 7,054,749 + AO356_30220 0.78 +1.0 7,054,749 + AO356_30220 0.78 -0.8 7,054,749 + AO356_30220 0.78 -2.0 7,054,749 + AO356_30220 0.78 +1.7 7,054,749 + AO356_30220 0.78 -0.9 7,054,749 + AO356_30220 0.78 -2.4 7,054,750 - AO356_30220 0.78 +0.1 7,054,750 - AO356_30220 0.78 +1.9 7,054,750 - AO356_30220 0.78 +2.4 7,054,750 - AO356_30220 0.78 +0.0 7,054,819 + AO356_30220 0.82 -0.4 7,054,820 - AO356_30220 0.83 -1.6 7,054,845 - AO356_30220 0.84 -1.2 7,054,902 - AO356_30220 0.88 +0.1 7,054,902 - AO356_30220 0.88 +1.3 7,054,902 - AO356_30220 0.88 +0.9 7,055,052 - +2.8 7,055,052 - -2.2 7,055,408 + AO356_30225 0.16 -0.9 7,055,408 + AO356_30225 0.16 +0.3 7,055,409 - AO356_30225 0.16 +0.4 7,055,409 - AO356_30225 0.16 -1.2 7,055,414 + AO356_30225 0.16 +0.2 7,055,415 - AO356_30225 0.16 +0.0 7,055,415 - AO356_30225 0.16 +0.0 7,055,415 - AO356_30225 0.16 +0.6 7,055,418 + AO356_30225 0.17 +0.4 7,055,418 + AO356_30225 0.17 -1.2 7,055,418 + AO356_30225 0.17 +0.4 7,055,418 + AO356_30225 0.17 +1.0 7,055,418 + AO356_30225 0.17 +0.5 7,055,419 - AO356_30225 0.17 -0.4 7,055,540 + AO356_30225 0.24 -1.7 7,055,540 + AO356_30225 0.24 -0.6 7,055,637 - AO356_30225 0.30 +0.7 7,055,735 + AO356_30225 0.36 -1.7 7,055,735 + AO356_30225 0.36 +2.1 7,055,736 - AO356_30225 0.36 +1.0 7,055,736 - AO356_30225 0.36 -1.2 7,055,758 - AO356_30225 0.37 +1.0 7,055,795 + AO356_30225 0.40 +1.8 7,055,848 + AO356_30225 0.43 +0.5 7,055,848 + AO356_30225 0.43 +0.3 7,055,849 - AO356_30225 0.43 +0.4 7,055,903 + AO356_30225 0.46 -2.6 7,055,904 - AO356_30225 0.46 +0.2 7,055,904 - AO356_30225 0.46 +0.1 7,056,059 + AO356_30225 0.56 -2.2 7,056,059 + AO356_30225 0.56 +0.5 7,056,059 + AO356_30225 0.56 -2.2 7,056,059 + AO356_30225 0.56 +3.7 7,056,060 - AO356_30225 0.56 +1.5 7,056,060 - AO356_30225 0.56 -0.9 7,056,064 - AO356_30225 0.56 +1.8 7,056,064 - AO356_30225 0.56 -3.2 7,056,064 - AO356_30225 0.56 +0.9 7,056,094 + AO356_30225 0.58 +0.6 7,056,094 + AO356_30225 0.58 -0.7 7,056,095 - AO356_30225 0.58 -0.3 7,056,122 - AO356_30225 0.59 -0.1 7,056,244 + AO356_30225 0.67 +0.0 7,056,244 + AO356_30225 0.67 -1.0 7,056,244 + AO356_30225 0.67 -1.2 7,056,310 + AO356_30225 0.71 -3.0 7,056,313 - AO356_30225 0.71 -1.8 7,056,321 - AO356_30225 0.72 +1.6 7,056,324 + AO356_30225 0.72 +0.9 7,056,325 - AO356_30225 0.72 -1.6 7,056,325 - AO356_30225 0.72 -1.8 7,056,325 - AO356_30225 0.72 +2.1 7,056,380 + AO356_30225 0.75 -0.4 7,056,422 + AO356_30225 0.78 -0.8 7,056,423 - AO356_30225 0.78 +2.9 7,056,505 + AO356_30225 0.83 -1.1 7,056,505 + AO356_30225 0.83 -0.6 7,056,505 + AO356_30225 0.83 +2.0 7,056,557 + AO356_30225 0.86 -0.9 7,056,557 + AO356_30225 0.86 +1.1 7,056,558 - AO356_30225 0.86 +1.5 7,056,558 - AO356_30225 0.86 +0.9 7,056,626 + -2.0 7,056,651 + +0.8 7,056,652 - +0.4 7,056,690 + +0.8 7,056,770 + -0.6 7,056,771 - -0.4 7,056,777 - -0.7 7,056,789 - +0.6 7,056,804 + -0.1 7,056,889 - AO356_30230 0.13 -0.4 7,056,923 + AO356_30230 0.18 -1.0 7,056,924 - AO356_30230 0.18 +0.3 7,056,924 - AO356_30230 0.18 -3.0 7,056,924 - AO356_30230 0.18 -0.1 7,056,925 + AO356_30230 0.18 +0.2 7,056,925 + AO356_30230 0.18 -0.8 7,056,925 + AO356_30230 0.18 +0.4 7,056,925 + AO356_30230 0.18 +1.0 7,056,925 + AO356_30230 0.18 +1.1 7,056,926 - AO356_30230 0.18 +1.5 7,057,004 - AO356_30230 0.30 -0.8 7,057,043 + AO356_30230 0.36 +0.0 7,057,043 + AO356_30230 0.36 +1.0 7,057,043 + AO356_30230 0.36 -1.0 7,057,043 + AO356_30230 0.36 -1.2 7,057,043 + AO356_30230 0.36 +1.3 7,057,044 - AO356_30230 0.36 +2.2 7,057,067 + AO356_30230 0.39 -0.3 7,057,067 + AO356_30230 0.39 -0.9 7,057,552 + +0.2 7,057,552 + +0.3 7,057,552 + -0.2 7,057,553 - +0.8 7,057,606 + -0.4 7,057,606 + +0.9 7,057,606 + -1.2 7,057,606 + +1.1 7,057,607 - +1.5 7,057,607 - +0.1 7,057,607 - +0.4 7,057,607 - +0.6 7,057,607 - -1.6 7,057,607 - +1.5 7,057,607 - +0.6 7,057,607 - -0.2 7,057,607 - -0.7 7,057,640 + -2.0 7,057,654 + -0.1 7,057,682 + -2.2 7,057,682 + -0.4 7,057,683 - +0.8 7,057,683 - -0.2 7,057,683 - +1.3 7,057,683 - +1.3 7,057,777 + AO356_30235 0.12 -1.9 7,057,777 + AO356_30235 0.12 +1.7 7,057,777 + AO356_30235 0.12 +1.2 7,057,777 + AO356_30235 0.12 -3.1 7,057,777 + AO356_30235 0.12 +2.3 7,057,777 + AO356_30235 0.12 +1.1 7,057,778 - AO356_30235 0.12 +1.0 7,057,778 - AO356_30235 0.12 +1.3 7,057,778 - AO356_30235 0.12 -0.6
Or see this region's nucleotide sequence