Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30190 and AO356_30195 are separated by 107 nucleotides AO356_30195 and AO356_30200 are separated by 59 nucleotides AO356_30200 and AO356_30205 are separated by 199 nucleotides
AO356_30190: AO356_30190 - hypothetical protein, at 7,046,768 to 7,047,106
_30190
AO356_30195: AO356_30195 - oxidoreductase, at 7,047,214 to 7,047,957
_30195
AO356_30200: AO356_30200 - aldo/keto reductase, at 7,048,017 to 7,048,967
_30200
AO356_30205: AO356_30205 - alcohol dehydrogenase, at 7,049,167 to 7,050,501
_30205
Position (kb) 7048
7049 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 7047.020 kb on + strand, within AO356_30190 at 7047.020 kb on + strand, within AO356_30190 at 7047.020 kb on + strand, within AO356_30190 at 7047.020 kb on + strand, within AO356_30190 at 7047.020 kb on + strand, within AO356_30190 at 7047.020 kb on + strand, within AO356_30190 at 7047.020 kb on + strand, within AO356_30190 at 7047.021 kb on - strand, within AO356_30190 at 7047.021 kb on - strand, within AO356_30190 at 7047.125 kb on + strand at 7047.125 kb on + strand at 7047.125 kb on + strand at 7047.125 kb on + strand at 7047.126 kb on - strand at 7047.126 kb on - strand at 7047.156 kb on + strand at 7047.230 kb on + strand at 7047.230 kb on + strand at 7047.539 kb on + strand, within AO356_30195 at 7047.539 kb on + strand, within AO356_30195 at 7047.624 kb on + strand, within AO356_30195 at 7047.625 kb on - strand, within AO356_30195 at 7047.625 kb on - strand, within AO356_30195 at 7047.644 kb on + strand, within AO356_30195 at 7047.644 kb on + strand, within AO356_30195 at 7047.644 kb on + strand, within AO356_30195 at 7047.671 kb on - strand, within AO356_30195 at 7047.838 kb on + strand, within AO356_30195 at 7047.838 kb on + strand, within AO356_30195 at 7047.838 kb on + strand, within AO356_30195 at 7047.838 kb on + strand, within AO356_30195 at 7047.838 kb on + strand, within AO356_30195 at 7047.839 kb on - strand, within AO356_30195 at 7047.839 kb on - strand, within AO356_30195 at 7047.847 kb on + strand, within AO356_30195 at 7047.848 kb on - strand, within AO356_30195 at 7048.027 kb on + strand at 7048.033 kb on + strand at 7048.034 kb on - strand at 7048.034 kb on - strand at 7048.119 kb on + strand, within AO356_30200 at 7048.120 kb on - strand, within AO356_30200 at 7048.120 kb on - strand, within AO356_30200 at 7048.318 kb on - strand, within AO356_30200 at 7048.372 kb on - strand, within AO356_30200 at 7048.372 kb on - strand, within AO356_30200 at 7048.385 kb on - strand, within AO356_30200 at 7048.490 kb on + strand, within AO356_30200 at 7048.490 kb on + strand, within AO356_30200 at 7048.628 kb on + strand, within AO356_30200 at 7048.629 kb on - strand, within AO356_30200 at 7048.629 kb on - strand, within AO356_30200 at 7048.785 kb on + strand, within AO356_30200 at 7048.786 kb on - strand, within AO356_30200 at 7048.852 kb on + strand, within AO356_30200 at 7049.007 kb on + strand at 7049.007 kb on + strand at 7049.007 kb on + strand at 7049.010 kb on + strand at 7049.160 kb on + strand at 7049.161 kb on - strand at 7049.291 kb on - strand at 7049.342 kb on + strand, within AO356_30205 at 7049.343 kb on - strand, within AO356_30205 at 7049.407 kb on - strand, within AO356_30205 at 7049.508 kb on + strand, within AO356_30205 at 7049.510 kb on + strand, within AO356_30205 at 7049.511 kb on - strand, within AO356_30205 at 7049.511 kb on - strand, within AO356_30205 at 7049.511 kb on - strand, within AO356_30205 at 7049.511 kb on - strand, within AO356_30205 at 7049.511 kb on - strand, within AO356_30205 at 7049.511 kb on - strand, within AO356_30205 at 7049.511 kb on - strand, within AO356_30205 at 7049.511 kb on - strand, within AO356_30205 at 7049.612 kb on + strand, within AO356_30205 at 7049.613 kb on - strand, within AO356_30205 at 7049.648 kb on + strand, within AO356_30205 at 7049.648 kb on + strand, within AO356_30205 at 7049.648 kb on + strand, within AO356_30205 at 7049.648 kb on + strand, within AO356_30205 at 7049.649 kb on - strand, within AO356_30205 at 7049.649 kb on - strand, within AO356_30205 at 7049.649 kb on - strand, within AO356_30205 at 7049.707 kb on - strand, within AO356_30205 at 7049.724 kb on - strand, within AO356_30205 at 7049.915 kb on + strand, within AO356_30205
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 7,047,020 + AO356_30190 0.74 +0.4 7,047,020 + AO356_30190 0.74 -0.2 7,047,020 + AO356_30190 0.74 +0.1 7,047,020 + AO356_30190 0.74 -1.4 7,047,020 + AO356_30190 0.74 -0.2 7,047,020 + AO356_30190 0.74 -1.2 7,047,020 + AO356_30190 0.74 +0.4 7,047,021 - AO356_30190 0.75 +0.4 7,047,021 - AO356_30190 0.75 -0.2 7,047,125 + +0.9 7,047,125 + +2.0 7,047,125 + +1.0 7,047,125 + -2.0 7,047,126 - +4.3 7,047,126 - +0.0 7,047,156 + +1.4 7,047,230 + -0.3 7,047,230 + +2.0 7,047,539 + AO356_30195 0.44 -0.4 7,047,539 + AO356_30195 0.44 -0.4 7,047,624 + AO356_30195 0.55 -0.3 7,047,625 - AO356_30195 0.55 -0.8 7,047,625 - AO356_30195 0.55 -0.4 7,047,644 + AO356_30195 0.58 -0.5 7,047,644 + AO356_30195 0.58 -0.2 7,047,644 + AO356_30195 0.58 +0.1 7,047,671 - AO356_30195 0.61 +1.0 7,047,838 + AO356_30195 0.84 +0.4 7,047,838 + AO356_30195 0.84 -0.4 7,047,838 + AO356_30195 0.84 +1.0 7,047,838 + AO356_30195 0.84 -0.4 7,047,838 + AO356_30195 0.84 -0.4 7,047,839 - AO356_30195 0.84 -1.2 7,047,839 - AO356_30195 0.84 +1.1 7,047,847 + AO356_30195 0.85 +0.1 7,047,848 - AO356_30195 0.85 -1.5 7,048,027 + +0.0 7,048,033 + -2.2 7,048,034 - -0.8 7,048,034 - +1.2 7,048,119 + AO356_30200 0.11 +2.7 7,048,120 - AO356_30200 0.11 -0.3 7,048,120 - AO356_30200 0.11 +0.6 7,048,318 - AO356_30200 0.32 +0.8 7,048,372 - AO356_30200 0.37 +0.3 7,048,372 - AO356_30200 0.37 +0.7 7,048,385 - AO356_30200 0.39 +2.7 7,048,490 + AO356_30200 0.50 -2.8 7,048,490 + AO356_30200 0.50 -0.8 7,048,628 + AO356_30200 0.64 +3.6 7,048,629 - AO356_30200 0.64 -2.9 7,048,629 - AO356_30200 0.64 +1.0 7,048,785 + AO356_30200 0.81 +1.4 7,048,786 - AO356_30200 0.81 -0.5 7,048,852 + AO356_30200 0.88 +1.1 7,049,007 + +0.4 7,049,007 + +1.0 7,049,007 + +0.5 7,049,010 + +0.0 7,049,160 + +1.1 7,049,161 - +0.1 7,049,291 - +0.1 7,049,342 + AO356_30205 0.13 -1.6 7,049,343 - AO356_30205 0.13 +0.8 7,049,407 - AO356_30205 0.18 +1.0 7,049,508 + AO356_30205 0.26 +0.2 7,049,510 + AO356_30205 0.26 -3.3 7,049,511 - AO356_30205 0.26 +1.3 7,049,511 - AO356_30205 0.26 +0.9 7,049,511 - AO356_30205 0.26 +0.8 7,049,511 - AO356_30205 0.26 +2.9 7,049,511 - AO356_30205 0.26 +0.2 7,049,511 - AO356_30205 0.26 -2.4 7,049,511 - AO356_30205 0.26 -0.3 7,049,511 - AO356_30205 0.26 +0.6 7,049,612 + AO356_30205 0.33 +0.4 7,049,613 - AO356_30205 0.33 -0.6 7,049,648 + AO356_30205 0.36 +0.2 7,049,648 + AO356_30205 0.36 -0.7 7,049,648 + AO356_30205 0.36 -0.4 7,049,648 + AO356_30205 0.36 +1.2 7,049,649 - AO356_30205 0.36 +0.6 7,049,649 - AO356_30205 0.36 -0.9 7,049,649 - AO356_30205 0.36 +0.3 7,049,707 - AO356_30205 0.40 -1.9 7,049,724 - AO356_30205 0.42 -0.7 7,049,915 + AO356_30205 0.56 -2.7
Or see this region's nucleotide sequence