Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28845

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28840 and AO356_28845 overlap by 7 nucleotidesAO356_28845 and AO356_28850 are separated by 43 nucleotides AO356_28840: AO356_28840 - iron-siderophore ABC transporter permease, at 6,707,241 to 6,708,302 _28840 AO356_28845: AO356_28845 - ferrichrome ABC transporter, at 6,708,296 to 6,709,051 _28845 AO356_28850: AO356_28850 - chemotaxis protein, at 6,709,095 to 6,711,056 _28850 Position (kb) 6708 6709 6710Strain fitness (log2 ratio) -2 -1 0 1at 6708.400 kb on - strand, within AO356_28845at 6708.516 kb on - strand, within AO356_28845at 6708.516 kb on - strand, within AO356_28845at 6708.558 kb on - strand, within AO356_28845at 6708.980 kb on + strandat 6708.981 kb on - strandat 6709.286 kb on + strandat 6709.287 kb on - strandat 6709.287 kb on - strandat 6709.698 kb on - strand, within AO356_28850at 6709.770 kb on - strand, within AO356_28850

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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6,708,400 - AO356_28845 0.14 +0.1
6,708,516 - AO356_28845 0.29 -0.2
6,708,516 - AO356_28845 0.29 +1.3
6,708,558 - AO356_28845 0.35 -0.9
6,708,980 + -0.4
6,708,981 - -0.4
6,709,286 + -0.9
6,709,287 - -0.3
6,709,287 - -1.8
6,709,698 - AO356_28850 0.31 -0.3
6,709,770 - AO356_28850 0.34 +1.4

Or see this region's nucleotide sequence