Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28395

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28385 and AO356_28390 are separated by 67 nucleotidesAO356_28390 and AO356_28395 are separated by 13 nucleotidesAO356_28395 and AO356_28400 are separated by 14 nucleotides AO356_28385: AO356_28385 - ABC transporter permease, at 6,601,776 to 6,602,657 _28385 AO356_28390: AO356_28390 - ABC transporter ATP-binding protein, at 6,602,725 to 6,603,507 _28390 AO356_28395: AO356_28395 - long-chain fatty acid--CoA ligase, at 6,603,521 to 6,604,681 _28395 AO356_28400: AO356_28400 - dimethyl sulfone monooxygenase SfnG, at 6,604,696 to 6,605,793 _28400 Position (kb) 6603 6604 6605Strain fitness (log2 ratio) -2 -1 0 1 2at 6602.573 kb on - strandat 6602.606 kb on - strandat 6602.606 kb on - strandat 6602.606 kb on - strandat 6602.606 kb on - strandat 6602.606 kb on - strandat 6602.606 kb on - strandat 6602.668 kb on - strandat 6602.773 kb on + strandat 6603.029 kb on + strand, within AO356_28390at 6603.466 kb on - strandat 6604.765 kb on - strandat 6604.775 kb on + strandat 6604.775 kb on + strandat 6604.776 kb on - strandat 6604.829 kb on - strand, within AO356_28400at 6604.904 kb on + strand, within AO356_28400at 6604.904 kb on + strand, within AO356_28400at 6604.905 kb on - strand, within AO356_28400at 6605.282 kb on + strand, within AO356_28400at 6605.283 kb on - strand, within AO356_28400at 6605.297 kb on + strand, within AO356_28400at 6605.604 kb on - strand, within AO356_28400

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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6,602,573 - +0.7
6,602,606 - -1.9
6,602,606 - +2.2
6,602,606 - -0.1
6,602,606 - -1.6
6,602,606 - +2.4
6,602,606 - -0.4
6,602,668 - +0.3
6,602,773 + -1.6
6,603,029 + AO356_28390 0.39 +0.3
6,603,466 - +0.4
6,604,765 - +0.8
6,604,775 + -2.1
6,604,775 + +0.3
6,604,776 - -0.7
6,604,829 - AO356_28400 0.12 +0.1
6,604,904 + AO356_28400 0.19 -0.9
6,604,904 + AO356_28400 0.19 -1.5
6,604,905 - AO356_28400 0.19 +0.0
6,605,282 + AO356_28400 0.53 +0.3
6,605,283 - AO356_28400 0.53 -2.6
6,605,297 + AO356_28400 0.55 -1.2
6,605,604 - AO356_28400 0.83 -2.0

Or see this region's nucleotide sequence