Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25975 and AO356_25980 are separated by 242 nucleotides AO356_25980 and AO356_25985 are separated by 295 nucleotides
AO356_25975: AO356_25975 - aldehyde dehydrogenase, at 5,870,822 to 5,872,447
_25975
AO356_25980: AO356_25980 - autotransporter subunit beta, at 5,872,690 to 5,873,604
_25980
AO356_25985: AO356_25985 - autotransporter, at 5,873,900 to 5,876,359
_25985
Position (kb) 5872
5873
5874 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5871.729 kb on + strand, within AO356_25975 at 5871.729 kb on + strand, within AO356_25975 at 5871.729 kb on + strand, within AO356_25975 at 5871.730 kb on - strand, within AO356_25975 at 5871.730 kb on - strand, within AO356_25975 at 5871.730 kb on - strand, within AO356_25975 at 5871.889 kb on - strand, within AO356_25975 at 5872.014 kb on + strand, within AO356_25975 at 5872.014 kb on + strand, within AO356_25975 at 5872.015 kb on - strand, within AO356_25975 at 5872.189 kb on - strand, within AO356_25975 at 5872.290 kb on + strand at 5872.291 kb on - strand at 5872.291 kb on - strand at 5872.291 kb on - strand at 5872.453 kb on + strand at 5872.514 kb on + strand at 5872.517 kb on - strand at 5872.517 kb on - strand at 5872.575 kb on + strand at 5872.719 kb on + strand at 5872.775 kb on + strand at 5872.775 kb on + strand at 5872.952 kb on + strand, within AO356_25980 at 5872.952 kb on + strand, within AO356_25980 at 5872.952 kb on + strand, within AO356_25980 at 5872.953 kb on - strand, within AO356_25980 at 5872.956 kb on + strand, within AO356_25980 at 5872.956 kb on + strand, within AO356_25980 at 5872.957 kb on - strand, within AO356_25980 at 5873.178 kb on - strand, within AO356_25980 at 5873.376 kb on + strand, within AO356_25980 at 5873.741 kb on + strand at 5873.742 kb on - strand at 5873.742 kb on - strand at 5873.742 kb on - strand at 5873.754 kb on - strand at 5873.756 kb on + strand at 5873.756 kb on + strand at 5873.756 kb on + strand at 5873.757 kb on - strand at 5873.757 kb on - strand at 5873.757 kb on - strand at 5873.757 kb on - strand at 5873.764 kb on - strand at 5873.970 kb on + strand at 5874.109 kb on + strand at 5874.267 kb on + strand, within AO356_25985 at 5874.268 kb on - strand, within AO356_25985 at 5874.322 kb on - strand, within AO356_25985 at 5874.322 kb on - strand, within AO356_25985 at 5874.463 kb on - strand, within AO356_25985 at 5874.471 kb on + strand, within AO356_25985 at 5874.491 kb on + strand, within AO356_25985
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 5,871,729 + AO356_25975 0.56 +1.0 5,871,729 + AO356_25975 0.56 -1.0 5,871,729 + AO356_25975 0.56 -0.7 5,871,730 - AO356_25975 0.56 +1.9 5,871,730 - AO356_25975 0.56 +1.6 5,871,730 - AO356_25975 0.56 +2.8 5,871,889 - AO356_25975 0.66 -1.9 5,872,014 + AO356_25975 0.73 -1.5 5,872,014 + AO356_25975 0.73 +1.6 5,872,015 - AO356_25975 0.73 +0.0 5,872,189 - AO356_25975 0.84 -0.2 5,872,290 + +0.0 5,872,291 - +0.7 5,872,291 - -0.8 5,872,291 - +0.5 5,872,453 + +0.6 5,872,514 + -2.2 5,872,517 - -1.9 5,872,517 - -0.1 5,872,575 + -2.3 5,872,719 + +0.4 5,872,775 + +1.5 5,872,775 + -1.2 5,872,952 + AO356_25980 0.29 -0.8 5,872,952 + AO356_25980 0.29 +0.4 5,872,952 + AO356_25980 0.29 -0.2 5,872,953 - AO356_25980 0.29 -0.6 5,872,956 + AO356_25980 0.29 -0.5 5,872,956 + AO356_25980 0.29 +0.0 5,872,957 - AO356_25980 0.29 -0.6 5,873,178 - AO356_25980 0.53 -1.4 5,873,376 + AO356_25980 0.75 -1.1 5,873,741 + -0.7 5,873,742 - -2.1 5,873,742 - +2.0 5,873,742 - -0.8 5,873,754 - +0.2 5,873,756 + +1.2 5,873,756 + +0.9 5,873,756 + -0.3 5,873,757 - -0.5 5,873,757 - -0.6 5,873,757 - +0.5 5,873,757 - +0.6 5,873,764 - -2.5 5,873,970 + -0.8 5,874,109 + -0.6 5,874,267 + AO356_25985 0.15 -0.4 5,874,268 - AO356_25985 0.15 -0.0 5,874,322 - AO356_25985 0.17 +1.2 5,874,322 - AO356_25985 0.17 +0.0 5,874,463 - AO356_25985 0.23 +1.3 5,874,471 + AO356_25985 0.23 -1.2 5,874,491 + AO356_25985 0.24 +1.3
Or see this region's nucleotide sequence