Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19595 and AO356_19600 are separated by 114 nucleotides AO356_19600 and AO356_19605 overlap by 11 nucleotides
AO356_19595: AO356_19595 - urea transporter, at 4,393,527 to 4,394,426
_19595
AO356_19600: AO356_19600 - pyruvate kinase, at 4,394,541 to 4,395,956
_19600
AO356_19605: AO356_19605 - hydroxypyruvate reductase, at 4,395,946 to 4,397,226
_19605
Position (kb) 4394
4395
4396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4393.554 kb on + strand at 4393.555 kb on - strand at 4393.763 kb on + strand, within AO356_19595 at 4394.053 kb on + strand, within AO356_19595 at 4394.203 kb on + strand, within AO356_19595 at 4394.203 kb on + strand, within AO356_19595 at 4394.204 kb on - strand, within AO356_19595 at 4394.204 kb on - strand, within AO356_19595 at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.533 kb on + strand at 4394.542 kb on + strand at 4394.543 kb on - strand at 4394.543 kb on - strand at 4394.618 kb on + strand at 4394.619 kb on - strand at 4394.619 kb on - strand at 4394.830 kb on + strand, within AO356_19600 at 4394.830 kb on + strand, within AO356_19600 at 4394.830 kb on + strand, within AO356_19600 at 4394.831 kb on - strand, within AO356_19600 at 4394.831 kb on - strand, within AO356_19600 at 4394.944 kb on + strand, within AO356_19600 at 4394.945 kb on - strand, within AO356_19600 at 4394.945 kb on - strand, within AO356_19600 at 4395.773 kb on - strand, within AO356_19600 at 4395.944 kb on + strand at 4396.050 kb on - strand at 4396.050 kb on - strand at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.191 kb on - strand, within AO356_19605 at 4396.191 kb on - strand, within AO356_19605 at 4396.614 kb on + strand, within AO356_19605 at 4396.614 kb on + strand, within AO356_19605 at 4396.615 kb on - strand, within AO356_19605 at 4396.685 kb on + strand, within AO356_19605 at 4396.686 kb on - strand, within AO356_19605 at 4396.686 kb on - strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.692 kb on - strand, within AO356_19605
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 4,393,554 + +2.0 4,393,555 - -0.4 4,393,763 + AO356_19595 0.26 +1.9 4,394,053 + AO356_19595 0.58 -2.5 4,394,203 + AO356_19595 0.75 +2.0 4,394,203 + AO356_19595 0.75 +0.9 4,394,204 - AO356_19595 0.75 -2.0 4,394,204 - AO356_19595 0.75 +0.1 4,394,429 + +1.2 4,394,429 + +1.3 4,394,429 + -0.2 4,394,429 + -0.2 4,394,429 + +0.0 4,394,429 + +2.0 4,394,429 + +0.6 4,394,429 + -1.0 4,394,429 + +1.1 4,394,429 + +1.1 4,394,429 + +0.5 4,394,429 + -2.0 4,394,430 - +0.6 4,394,430 - -1.5 4,394,430 - +0.4 4,394,430 - -1.5 4,394,430 - -2.4 4,394,430 - +0.4 4,394,430 - -1.2 4,394,430 - +2.3 4,394,430 - +0.6 4,394,430 - +0.6 4,394,430 - -0.3 4,394,430 - -0.9 4,394,430 - -0.8 4,394,533 + -2.0 4,394,542 + +1.6 4,394,543 - +0.1 4,394,543 - -0.4 4,394,618 + -2.0 4,394,619 - +0.0 4,394,619 - +1.0 4,394,830 + AO356_19600 0.20 -1.3 4,394,830 + AO356_19600 0.20 -0.6 4,394,830 + AO356_19600 0.20 +3.0 4,394,831 - AO356_19600 0.20 -1.0 4,394,831 - AO356_19600 0.20 +0.8 4,394,944 + AO356_19600 0.28 +0.9 4,394,945 - AO356_19600 0.29 -0.0 4,394,945 - AO356_19600 0.29 -0.2 4,395,773 - AO356_19600 0.87 -0.8 4,395,944 + +1.9 4,396,050 - +2.3 4,396,050 - -0.2 4,396,190 + AO356_19605 0.19 -1.3 4,396,190 + AO356_19605 0.19 +0.6 4,396,190 + AO356_19605 0.19 +0.5 4,396,190 + AO356_19605 0.19 -1.7 4,396,190 + AO356_19605 0.19 -0.2 4,396,190 + AO356_19605 0.19 +0.7 4,396,190 + AO356_19605 0.19 +2.2 4,396,191 - AO356_19605 0.19 +2.1 4,396,191 - AO356_19605 0.19 -2.2 4,396,614 + AO356_19605 0.52 +2.1 4,396,614 + AO356_19605 0.52 +1.1 4,396,615 - AO356_19605 0.52 +0.1 4,396,685 + AO356_19605 0.58 -3.1 4,396,686 - AO356_19605 0.58 +0.4 4,396,686 - AO356_19605 0.58 -1.3 4,396,691 + AO356_19605 0.58 +2.3 4,396,691 + AO356_19605 0.58 +1.4 4,396,691 + AO356_19605 0.58 -0.9 4,396,691 + AO356_19605 0.58 -0.9 4,396,692 - AO356_19605 0.58 -2.5
Or see this region's nucleotide sequence