Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19220 and AO356_19225 are separated by 146 nucleotides AO356_19225 and AO356_19230 are separated by 237 nucleotides AO356_19230 and AO356_19235 are separated by 103 nucleotides
AO356_19220: AO356_19220 - recombinase RmuC, at 4,313,138 to 4,314,640
_19220
AO356_19225: AO356_19225 - histidine kinase, at 4,314,787 to 4,318,257
_19225
AO356_19230: AO356_19230 - TetR family transcriptional regulator, at 4,318,495 to 4,319,034
_19230
AO356_19235: AO356_19235 - MFS transporter, at 4,319,138 to 4,320,328
_19235
Position (kb) 4314
4315
4316
4317
4318
4319 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4313.857 kb on + strand, within AO356_19220 at 4313.858 kb on - strand, within AO356_19220 at 4313.922 kb on - strand, within AO356_19220 at 4313.984 kb on + strand, within AO356_19220 at 4313.984 kb on + strand, within AO356_19220 at 4313.984 kb on + strand, within AO356_19220 at 4313.984 kb on + strand, within AO356_19220 at 4314.038 kb on + strand, within AO356_19220 at 4314.038 kb on + strand, within AO356_19220 at 4314.038 kb on + strand, within AO356_19220 at 4314.047 kb on + strand, within AO356_19220 at 4314.047 kb on + strand, within AO356_19220 at 4314.048 kb on - strand, within AO356_19220 at 4314.048 kb on - strand, within AO356_19220 at 4314.048 kb on - strand, within AO356_19220 at 4314.099 kb on + strand, within AO356_19220 at 4314.099 kb on + strand, within AO356_19220 at 4314.099 kb on + strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.100 kb on - strand, within AO356_19220 at 4314.143 kb on + strand, within AO356_19220 at 4314.144 kb on - strand, within AO356_19220 at 4314.144 kb on - strand, within AO356_19220 at 4314.144 kb on - strand, within AO356_19220 at 4314.144 kb on - strand, within AO356_19220 at 4314.144 kb on - strand, within AO356_19220 at 4314.144 kb on - strand, within AO356_19220 at 4314.144 kb on - strand, within AO356_19220 at 4314.455 kb on + strand, within AO356_19220 at 4314.455 kb on + strand, within AO356_19220 at 4314.456 kb on - strand, within AO356_19220 at 4314.456 kb on - strand, within AO356_19220 at 4314.456 kb on - strand, within AO356_19220 at 4314.681 kb on + strand at 4314.681 kb on + strand at 4314.681 kb on + strand at 4314.788 kb on + strand at 4314.789 kb on - strand at 4314.789 kb on - strand at 4314.851 kb on + strand at 4314.852 kb on - strand at 4315.093 kb on + strand at 4315.093 kb on + strand at 4315.094 kb on - strand at 4315.094 kb on - strand at 4315.261 kb on + strand, within AO356_19225 at 4315.262 kb on - strand, within AO356_19225 at 4315.272 kb on + strand, within AO356_19225 at 4315.273 kb on - strand, within AO356_19225 at 4315.273 kb on - strand, within AO356_19225 at 4315.273 kb on - strand, within AO356_19225 at 4315.453 kb on + strand, within AO356_19225 at 4315.526 kb on - strand, within AO356_19225 at 4315.689 kb on + strand, within AO356_19225 at 4315.877 kb on + strand, within AO356_19225 at 4315.877 kb on + strand, within AO356_19225 at 4316.107 kb on - strand, within AO356_19225 at 4316.107 kb on - strand, within AO356_19225 at 4316.196 kb on - strand, within AO356_19225 at 4316.246 kb on + strand, within AO356_19225 at 4316.470 kb on + strand, within AO356_19225 at 4316.470 kb on + strand, within AO356_19225 at 4316.471 kb on - strand, within AO356_19225 at 4316.897 kb on + strand, within AO356_19225 at 4316.897 kb on + strand, within AO356_19225 at 4316.897 kb on + strand, within AO356_19225 at 4317.068 kb on + strand, within AO356_19225 at 4317.068 kb on + strand, within AO356_19225 at 4317.068 kb on + strand, within AO356_19225 at 4317.068 kb on + strand, within AO356_19225 at 4317.068 kb on + strand, within AO356_19225 at 4317.068 kb on + strand, within AO356_19225 at 4317.069 kb on - strand, within AO356_19225 at 4317.069 kb on - strand, within AO356_19225 at 4317.399 kb on - strand, within AO356_19225 at 4317.399 kb on - strand, within AO356_19225 at 4317.409 kb on + strand, within AO356_19225 at 4317.551 kb on + strand, within AO356_19225 at 4317.552 kb on - strand, within AO356_19225 at 4317.552 kb on - strand, within AO356_19225 at 4317.552 kb on - strand, within AO356_19225 at 4317.552 kb on - strand, within AO356_19225 at 4317.608 kb on + strand, within AO356_19225 at 4317.608 kb on + strand, within AO356_19225 at 4317.609 kb on - strand, within AO356_19225 at 4317.617 kb on + strand, within AO356_19225 at 4317.617 kb on + strand, within AO356_19225 at 4317.618 kb on - strand, within AO356_19225 at 4317.618 kb on - strand, within AO356_19225 at 4317.618 kb on - strand, within AO356_19225 at 4317.618 kb on - strand, within AO356_19225 at 4317.867 kb on - strand, within AO356_19225 at 4317.867 kb on - strand, within AO356_19225 at 4317.867 kb on - strand, within AO356_19225 at 4317.867 kb on - strand, within AO356_19225 at 4318.040 kb on + strand at 4318.041 kb on - strand at 4318.041 kb on - strand at 4318.041 kb on - strand at 4318.044 kb on + strand at 4318.044 kb on + strand at 4318.044 kb on + strand at 4318.045 kb on - strand at 4318.045 kb on - strand at 4318.045 kb on - strand at 4318.112 kb on + strand at 4318.112 kb on + strand at 4318.112 kb on + strand at 4318.112 kb on + strand at 4318.112 kb on + strand at 4318.112 kb on + strand at 4318.113 kb on - strand at 4318.113 kb on - strand at 4318.113 kb on - strand at 4318.113 kb on - strand at 4318.133 kb on + strand at 4318.212 kb on + strand at 4318.213 kb on - strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.215 kb on - strand at 4318.215 kb on - strand at 4318.215 kb on - strand at 4318.215 kb on - strand at 4318.215 kb on - strand at 4318.215 kb on - strand at 4318.373 kb on - strand at 4318.444 kb on + strand at 4318.444 kb on + strand at 4318.445 kb on - strand at 4318.445 kb on - strand at 4318.445 kb on - strand at 4318.445 kb on - strand at 4318.445 kb on - strand at 4318.445 kb on - strand at 4318.526 kb on + strand at 4318.527 kb on - strand at 4318.675 kb on + strand, within AO356_19230 at 4318.682 kb on + strand, within AO356_19230 at 4318.683 kb on - strand, within AO356_19230 at 4318.683 kb on - strand, within AO356_19230 at 4318.683 kb on - strand, within AO356_19230 at 4318.723 kb on - strand, within AO356_19230 at 4318.723 kb on - strand, within AO356_19230 at 4318.754 kb on + strand, within AO356_19230 at 4318.755 kb on - strand, within AO356_19230 at 4318.877 kb on + strand, within AO356_19230 at 4318.881 kb on + strand, within AO356_19230 at 4318.881 kb on + strand, within AO356_19230 at 4319.014 kb on + strand at 4319.014 kb on + strand at 4319.015 kb on - strand at 4319.015 kb on - strand at 4319.015 kb on - strand at 4319.025 kb on + strand at 4319.025 kb on + strand at 4319.025 kb on + strand at 4319.025 kb on + strand at 4319.026 kb on - strand at 4319.026 kb on - strand at 4319.026 kb on - strand at 4319.026 kb on - strand at 4319.026 kb on - strand at 4319.026 kb on - strand at 4319.028 kb on + strand at 4319.028 kb on + strand at 4319.028 kb on + strand at 4319.046 kb on + strand at 4319.185 kb on + strand at 4319.185 kb on + strand at 4319.186 kb on - strand at 4319.231 kb on + strand at 4319.231 kb on + strand at 4319.231 kb on + strand at 4319.231 kb on + strand at 4319.232 kb on - strand at 4319.232 kb on - strand at 4319.232 kb on - strand at 4319.232 kb on - strand at 4319.240 kb on + strand at 4319.241 kb on - strand at 4319.241 kb on - strand at 4319.253 kb on + strand at 4319.253 kb on + strand at 4319.253 kb on + strand at 4319.254 kb on - strand at 4319.254 kb on - strand at 4319.254 kb on - strand at 4319.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 4,313,857 + AO356_19220 0.48 +1.7 4,313,858 - AO356_19220 0.48 -0.3 4,313,922 - AO356_19220 0.52 +0.8 4,313,984 + AO356_19220 0.56 -2.4 4,313,984 + AO356_19220 0.56 +0.8 4,313,984 + AO356_19220 0.56 -2.2 4,313,984 + AO356_19220 0.56 -0.5 4,314,038 + AO356_19220 0.60 -2.9 4,314,038 + AO356_19220 0.60 +0.5 4,314,038 + AO356_19220 0.60 -1.0 4,314,047 + AO356_19220 0.60 -1.4 4,314,047 + AO356_19220 0.60 +0.0 4,314,048 - AO356_19220 0.61 -0.7 4,314,048 - AO356_19220 0.61 -0.6 4,314,048 - AO356_19220 0.61 -0.6 4,314,099 + AO356_19220 0.64 -3.0 4,314,099 + AO356_19220 0.64 -0.4 4,314,099 + AO356_19220 0.64 -0.6 4,314,100 - AO356_19220 0.64 +0.9 4,314,100 - AO356_19220 0.64 -3.1 4,314,100 - AO356_19220 0.64 +0.6 4,314,100 - AO356_19220 0.64 -1.8 4,314,100 - AO356_19220 0.64 +1.6 4,314,100 - AO356_19220 0.64 -2.5 4,314,100 - AO356_19220 0.64 -2.4 4,314,100 - AO356_19220 0.64 -0.1 4,314,100 - AO356_19220 0.64 +0.2 4,314,100 - AO356_19220 0.64 -0.0 4,314,100 - AO356_19220 0.64 +0.3 4,314,100 - AO356_19220 0.64 +1.3 4,314,100 - AO356_19220 0.64 -2.4 4,314,143 + AO356_19220 0.67 -0.5 4,314,144 - AO356_19220 0.67 -0.3 4,314,144 - AO356_19220 0.67 +0.8 4,314,144 - AO356_19220 0.67 +0.1 4,314,144 - AO356_19220 0.67 +1.3 4,314,144 - AO356_19220 0.67 +0.9 4,314,144 - AO356_19220 0.67 +1.6 4,314,144 - AO356_19220 0.67 -1.8 4,314,455 + AO356_19220 0.88 +1.8 4,314,455 + AO356_19220 0.88 +1.8 4,314,456 - AO356_19220 0.88 -0.8 4,314,456 - AO356_19220 0.88 -0.4 4,314,456 - AO356_19220 0.88 -0.6 4,314,681 + -2.8 4,314,681 + -0.6 4,314,681 + -3.7 4,314,788 + +0.1 4,314,789 - +1.1 4,314,789 - +0.3 4,314,851 + +1.3 4,314,852 - -0.8 4,315,093 + -0.0 4,315,093 + +0.9 4,315,094 - -0.2 4,315,094 - +0.5 4,315,261 + AO356_19225 0.14 -1.9 4,315,262 - AO356_19225 0.14 -0.6 4,315,272 + AO356_19225 0.14 +0.9 4,315,273 - AO356_19225 0.14 -1.7 4,315,273 - AO356_19225 0.14 -2.3 4,315,273 - AO356_19225 0.14 +1.2 4,315,453 + AO356_19225 0.19 +0.5 4,315,526 - AO356_19225 0.21 -1.5 4,315,689 + AO356_19225 0.26 -1.4 4,315,877 + AO356_19225 0.31 -2.1 4,315,877 + AO356_19225 0.31 -0.2 4,316,107 - AO356_19225 0.38 -0.5 4,316,107 - AO356_19225 0.38 +0.4 4,316,196 - AO356_19225 0.41 -0.1 4,316,246 + AO356_19225 0.42 -1.1 4,316,470 + AO356_19225 0.48 +0.4 4,316,470 + AO356_19225 0.48 -0.6 4,316,471 - AO356_19225 0.49 +0.0 4,316,897 + AO356_19225 0.61 +0.8 4,316,897 + AO356_19225 0.61 -2.8 4,316,897 + AO356_19225 0.61 -0.5 4,317,068 + AO356_19225 0.66 +0.2 4,317,068 + AO356_19225 0.66 -0.4 4,317,068 + AO356_19225 0.66 -0.6 4,317,068 + AO356_19225 0.66 -2.6 4,317,068 + AO356_19225 0.66 +1.1 4,317,068 + AO356_19225 0.66 +0.9 4,317,069 - AO356_19225 0.66 -0.2 4,317,069 - AO356_19225 0.66 +0.4 4,317,399 - AO356_19225 0.75 -0.5 4,317,399 - AO356_19225 0.75 -0.4 4,317,409 + AO356_19225 0.76 +0.7 4,317,551 + AO356_19225 0.80 +0.6 4,317,552 - AO356_19225 0.80 -0.0 4,317,552 - AO356_19225 0.80 +1.4 4,317,552 - AO356_19225 0.80 +0.9 4,317,552 - AO356_19225 0.80 +0.9 4,317,608 + AO356_19225 0.81 +0.5 4,317,608 + AO356_19225 0.81 +1.8 4,317,609 - AO356_19225 0.81 +1.7 4,317,617 + AO356_19225 0.82 +1.3 4,317,617 + AO356_19225 0.82 +0.7 4,317,618 - AO356_19225 0.82 -0.1 4,317,618 - AO356_19225 0.82 +1.4 4,317,618 - AO356_19225 0.82 +1.3 4,317,618 - AO356_19225 0.82 -0.0 4,317,867 - AO356_19225 0.89 -1.9 4,317,867 - AO356_19225 0.89 +1.2 4,317,867 - AO356_19225 0.89 -0.4 4,317,867 - AO356_19225 0.89 -2.6 4,318,040 + -1.6 4,318,041 - +0.1 4,318,041 - -3.0 4,318,041 - +0.2 4,318,044 + +0.5 4,318,044 + +0.3 4,318,044 + +2.0 4,318,045 - +0.4 4,318,045 - -1.4 4,318,045 - +1.0 4,318,112 + +0.5 4,318,112 + +0.4 4,318,112 + -2.3 4,318,112 + +1.8 4,318,112 + -0.8 4,318,112 + +0.2 4,318,113 - -0.4 4,318,113 - +0.3 4,318,113 - +0.4 4,318,113 - -2.1 4,318,133 + -1.2 4,318,212 + +0.3 4,318,213 - +0.1 4,318,214 + +1.5 4,318,214 + -0.9 4,318,214 + -0.2 4,318,214 + +0.1 4,318,214 + +1.9 4,318,214 + +0.0 4,318,214 + +0.4 4,318,214 + +0.0 4,318,214 + -0.2 4,318,215 - -0.5 4,318,215 - -1.3 4,318,215 - -0.7 4,318,215 - -1.6 4,318,215 - +1.7 4,318,215 - -2.7 4,318,373 - -0.7 4,318,444 + -0.2 4,318,444 + +0.7 4,318,445 - +0.8 4,318,445 - +0.2 4,318,445 - +1.8 4,318,445 - +0.4 4,318,445 - +2.2 4,318,445 - -0.3 4,318,526 + +0.8 4,318,527 - -2.0 4,318,675 + AO356_19230 0.33 +2.1 4,318,682 + AO356_19230 0.35 +1.3 4,318,683 - AO356_19230 0.35 -0.3 4,318,683 - AO356_19230 0.35 +1.3 4,318,683 - AO356_19230 0.35 +0.3 4,318,723 - AO356_19230 0.42 -0.6 4,318,723 - AO356_19230 0.42 -1.7 4,318,754 + AO356_19230 0.48 -0.1 4,318,755 - AO356_19230 0.48 -1.9 4,318,877 + AO356_19230 0.71 +1.1 4,318,881 + AO356_19230 0.71 -1.2 4,318,881 + AO356_19230 0.71 -1.8 4,319,014 + -1.4 4,319,014 + -2.4 4,319,015 - -0.2 4,319,015 - +1.2 4,319,015 - -1.8 4,319,025 + +0.2 4,319,025 + +0.6 4,319,025 + +1.5 4,319,025 + -2.1 4,319,026 - +0.2 4,319,026 - +4.3 4,319,026 - +0.7 4,319,026 - +0.1 4,319,026 - +2.1 4,319,026 - +0.8 4,319,028 + +0.1 4,319,028 + +0.1 4,319,028 + -1.2 4,319,046 + -1.1 4,319,185 + +1.5 4,319,185 + +0.4 4,319,186 - -0.8 4,319,231 + +0.8 4,319,231 + -2.6 4,319,231 + -0.2 4,319,231 + +0.5 4,319,232 - -0.6 4,319,232 - -2.6 4,319,232 - -1.3 4,319,232 - +0.4 4,319,240 + -1.9 4,319,241 - -0.7 4,319,241 - +0.7 4,319,253 + -1.0 4,319,253 + +0.8 4,319,253 + +1.3 4,319,254 - +1.6 4,319,254 - -1.6 4,319,254 - -0.6 4,319,254 - +1.0
Or see this region's nucleotide sequence