Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06670

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_06665 and AO356_06670 are separated by 249 nucleotidesAO356_06670 and AO356_06675 are separated by 117 nucleotides AO356_06665: AO356_06665 - inositol monophosphatase, at 1,472,239 to 1,473,057 _06665 AO356_06670: AO356_06670 - hypothetical protein, at 1,473,307 to 1,473,855 _06670 AO356_06675: AO356_06675 - preprotein translocase subunit SecF, at 1,473,973 to 1,474,887 _06675 Position (kb) 1473 1474Strain fitness (log2 ratio) -2 -1 0 1 2at 1473.068 kb on + strandat 1473.068 kb on + strandat 1473.069 kb on - strandat 1473.069 kb on - strandat 1473.100 kb on - strandat 1473.233 kb on + strandat 1473.233 kb on + strandat 1473.233 kb on + strandat 1473.233 kb on + strandat 1473.419 kb on + strand, within AO356_06670at 1473.419 kb on + strand, within AO356_06670at 1473.420 kb on - strand, within AO356_06670at 1473.420 kb on - strand, within AO356_06670at 1473.436 kb on + strand, within AO356_06670at 1473.437 kb on - strand, within AO356_06670at 1473.437 kb on - strand, within AO356_06670at 1473.491 kb on + strand, within AO356_06670at 1473.491 kb on + strand, within AO356_06670at 1473.491 kb on + strand, within AO356_06670at 1473.491 kb on + strand, within AO356_06670at 1473.491 kb on + strand, within AO356_06670at 1473.491 kb on + strand, within AO356_06670at 1473.491 kb on + strand, within AO356_06670at 1473.491 kb on + strand, within AO356_06670at 1473.492 kb on - strand, within AO356_06670at 1473.492 kb on - strand, within AO356_06670at 1473.492 kb on - strand, within AO356_06670at 1473.492 kb on - strand, within AO356_06670at 1473.528 kb on + strand, within AO356_06670at 1473.745 kb on + strand, within AO356_06670at 1473.745 kb on + strand, within AO356_06670at 1473.745 kb on + strand, within AO356_06670at 1473.745 kb on + strand, within AO356_06670at 1473.756 kb on - strand, within AO356_06670at 1473.756 kb on - strand, within AO356_06670at 1473.756 kb on - strand, within AO356_06670at 1473.782 kb on + strand, within AO356_06670at 1473.782 kb on + strand, within AO356_06670at 1473.782 kb on + strand, within AO356_06670at 1473.782 kb on + strand, within AO356_06670at 1473.783 kb on - strand, within AO356_06670at 1473.783 kb on - strand, within AO356_06670at 1473.783 kb on - strand, within AO356_06670at 1473.783 kb on - strand, within AO356_06670at 1473.808 kb on + strandat 1473.808 kb on + strandat 1473.826 kb on + strandat 1473.885 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
1,473,068 + -0.5
1,473,068 + +0.4
1,473,069 - +0.9
1,473,069 - -2.0
1,473,100 - -0.0
1,473,233 + -0.8
1,473,233 + +2.0
1,473,233 + -1.8
1,473,233 + -0.1
1,473,419 + AO356_06670 0.20 -0.5
1,473,419 + AO356_06670 0.20 -0.9
1,473,420 - AO356_06670 0.21 +1.7
1,473,420 - AO356_06670 0.21 +0.7
1,473,436 + AO356_06670 0.23 -0.1
1,473,437 - AO356_06670 0.24 -1.0
1,473,437 - AO356_06670 0.24 -0.5
1,473,491 + AO356_06670 0.34 +1.1
1,473,491 + AO356_06670 0.34 -0.4
1,473,491 + AO356_06670 0.34 -2.4
1,473,491 + AO356_06670 0.34 +0.9
1,473,491 + AO356_06670 0.34 +0.3
1,473,491 + AO356_06670 0.34 +0.6
1,473,491 + AO356_06670 0.34 +0.9
1,473,491 + AO356_06670 0.34 -0.8
1,473,492 - AO356_06670 0.34 -1.0
1,473,492 - AO356_06670 0.34 +0.1
1,473,492 - AO356_06670 0.34 -1.5
1,473,492 - AO356_06670 0.34 +0.9
1,473,528 + AO356_06670 0.40 +0.8
1,473,745 + AO356_06670 0.80 +0.4
1,473,745 + AO356_06670 0.80 +1.0
1,473,745 + AO356_06670 0.80 +0.7
1,473,745 + AO356_06670 0.80 -1.2
1,473,756 - AO356_06670 0.82 -1.6
1,473,756 - AO356_06670 0.82 -0.9
1,473,756 - AO356_06670 0.82 -1.9
1,473,782 + AO356_06670 0.87 -1.0
1,473,782 + AO356_06670 0.87 -0.5
1,473,782 + AO356_06670 0.87 +1.6
1,473,782 + AO356_06670 0.87 -0.8
1,473,783 - AO356_06670 0.87 +0.2
1,473,783 - AO356_06670 0.87 -1.8
1,473,783 - AO356_06670 0.87 -2.1
1,473,783 - AO356_06670 0.87 +1.4
1,473,808 + +0.4
1,473,808 + +0.5
1,473,826 + -0.5
1,473,885 - +1.4

Or see this region's nucleotide sequence