Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04260

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04255 and AO356_04260 are separated by 141 nucleotidesAO356_04260 and AO356_04265 are separated by 288 nucleotidesAO356_04265 and AO356_04270 overlap by 7 nucleotides AO356_04255: AO356_04255 - acyltransferase superfamily protein, at 965,664 to 966,788 _04255 AO356_04260: AO356_04260 - porin, at 966,930 to 968,240 _04260 AO356_04265: AO356_04265 - anti-sigma factor, at 968,529 to 968,765 _04265 AO356_04270: AO356_04270 - RNA polymerase subunit sigma-24, at 968,759 to 969,370 _04270 Position (kb) 966 967 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 966.080 kb on - strand, within AO356_04255at 966.103 kb on + strand, within AO356_04255at 966.104 kb on - strand, within AO356_04255at 966.124 kb on + strand, within AO356_04255at 966.292 kb on + strand, within AO356_04255at 966.293 kb on - strand, within AO356_04255at 966.400 kb on + strand, within AO356_04255at 966.401 kb on - strand, within AO356_04255at 966.505 kb on + strand, within AO356_04255at 966.506 kb on - strand, within AO356_04255at 966.508 kb on + strand, within AO356_04255at 966.508 kb on + strand, within AO356_04255at 966.508 kb on + strand, within AO356_04255at 966.509 kb on - strand, within AO356_04255at 966.509 kb on - strand, within AO356_04255at 966.509 kb on - strand, within AO356_04255at 966.559 kb on + strand, within AO356_04255at 966.559 kb on + strand, within AO356_04255at 966.559 kb on + strand, within AO356_04255at 966.559 kb on + strand, within AO356_04255at 966.560 kb on - strand, within AO356_04255at 966.560 kb on - strand, within AO356_04255at 966.560 kb on - strand, within AO356_04255at 966.560 kb on - strand, within AO356_04255at 966.569 kb on - strand, within AO356_04255at 966.569 kb on - strand, within AO356_04255at 966.851 kb on + strandat 966.852 kb on - strandat 966.890 kb on + strandat 966.913 kb on + strandat 966.913 kb on + strandat 966.914 kb on - strandat 966.914 kb on - strandat 966.914 kb on - strandat 966.914 kb on - strandat 966.940 kb on + strandat 966.940 kb on + strandat 966.940 kb on + strandat 966.940 kb on + strandat 966.940 kb on + strandat 966.941 kb on - strandat 966.941 kb on - strandat 966.941 kb on - strandat 966.941 kb on - strandat 967.018 kb on + strandat 967.018 kb on + strandat 967.018 kb on + strandat 967.018 kb on + strandat 967.018 kb on + strandat 967.018 kb on + strandat 967.019 kb on - strandat 967.019 kb on - strandat 967.051 kb on + strandat 967.160 kb on - strand, within AO356_04260at 967.223 kb on + strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.225 kb on + strand, within AO356_04260at 967.225 kb on + strand, within AO356_04260at 967.252 kb on + strand, within AO356_04260at 967.252 kb on + strand, within AO356_04260at 967.252 kb on + strand, within AO356_04260at 967.253 kb on - strand, within AO356_04260at 967.253 kb on - strand, within AO356_04260at 967.253 kb on - strand, within AO356_04260at 967.253 kb on - strand, within AO356_04260at 967.267 kb on + strand, within AO356_04260at 967.267 kb on + strand, within AO356_04260at 967.267 kb on + strand, within AO356_04260at 967.267 kb on + strand, within AO356_04260at 967.267 kb on + strand, within AO356_04260at 967.268 kb on - strand, within AO356_04260at 967.268 kb on - strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.552 kb on - strand, within AO356_04260at 967.681 kb on + strand, within AO356_04260at 967.682 kb on - strand, within AO356_04260at 967.682 kb on - strand, within AO356_04260at 967.682 kb on - strand, within AO356_04260at 967.759 kb on + strand, within AO356_04260at 967.769 kb on + strand, within AO356_04260at 967.870 kb on + strand, within AO356_04260at 967.870 kb on + strand, within AO356_04260at 967.870 kb on + strand, within AO356_04260at 967.870 kb on + strand, within AO356_04260at 967.870 kb on + strand, within AO356_04260at 967.871 kb on - strand, within AO356_04260at 967.894 kb on + strand, within AO356_04260at 967.894 kb on + strand, within AO356_04260at 967.894 kb on + strand, within AO356_04260at 967.933 kb on + strand, within AO356_04260at 967.933 kb on + strand, within AO356_04260at 967.933 kb on + strand, within AO356_04260at 967.933 kb on + strand, within AO356_04260at 967.934 kb on - strand, within AO356_04260at 967.934 kb on - strand, within AO356_04260at 967.934 kb on - strand, within AO356_04260at 967.945 kb on + strand, within AO356_04260at 967.945 kb on + strand, within AO356_04260at 967.960 kb on + strand, within AO356_04260at 967.960 kb on + strand, within AO356_04260at 968.000 kb on - strand, within AO356_04260at 968.032 kb on + strand, within AO356_04260at 968.032 kb on + strand, within AO356_04260at 968.033 kb on - strand, within AO356_04260at 968.033 kb on - strand, within AO356_04260at 968.033 kb on - strand, within AO356_04260at 968.053 kb on + strand, within AO356_04260at 968.053 kb on + strand, within AO356_04260at 968.260 kb on + strandat 968.261 kb on - strandat 968.265 kb on + strandat 968.265 kb on + strandat 968.265 kb on + strandat 968.265 kb on + strandat 968.265 kb on + strandat 968.265 kb on + strandat 968.265 kb on + strandat 968.266 kb on - strandat 968.266 kb on - strandat 968.266 kb on - strandat 968.266 kb on - strandat 968.450 kb on - strandat 968.476 kb on + strandat 968.476 kb on + strandat 968.863 kb on + strand, within AO356_04270at 968.863 kb on + strand, within AO356_04270at 968.909 kb on + strand, within AO356_04270at 969.117 kb on + strand, within AO356_04270at 969.118 kb on - strand, within AO356_04270at 969.118 kb on - strand, within AO356_04270

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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966,080 - AO356_04255 0.37 -1.0
966,103 + AO356_04255 0.39 +1.2
966,104 - AO356_04255 0.39 -1.1
966,124 + AO356_04255 0.41 -3.0
966,292 + AO356_04255 0.56 +0.9
966,293 - AO356_04255 0.56 -0.7
966,400 + AO356_04255 0.65 +0.3
966,401 - AO356_04255 0.66 +0.0
966,505 + AO356_04255 0.75 +1.2
966,506 - AO356_04255 0.75 +0.0
966,508 + AO356_04255 0.75 +0.3
966,508 + AO356_04255 0.75 -0.8
966,508 + AO356_04255 0.75 -1.3
966,509 - AO356_04255 0.75 -0.3
966,509 - AO356_04255 0.75 +0.9
966,509 - AO356_04255 0.75 +1.6
966,559 + AO356_04255 0.80 +1.3
966,559 + AO356_04255 0.80 +2.4
966,559 + AO356_04255 0.80 -3.1
966,559 + AO356_04255 0.80 +1.9
966,560 - AO356_04255 0.80 -0.6
966,560 - AO356_04255 0.80 -0.4
966,560 - AO356_04255 0.80 -2.7
966,560 - AO356_04255 0.80 +1.7
966,569 - AO356_04255 0.80 -0.9
966,569 - AO356_04255 0.80 +1.1
966,851 + +0.5
966,852 - +0.8
966,890 + -1.4
966,913 + +0.2
966,913 + -0.0
966,914 - +0.8
966,914 - -0.3
966,914 - -1.4
966,914 - -1.3
966,940 + -1.0
966,940 + +2.9
966,940 + -2.4
966,940 + +1.6
966,940 + -1.5
966,941 - -0.4
966,941 - +2.2
966,941 - -2.7
966,941 - +0.2
967,018 + +0.4
967,018 + -0.7
967,018 + +2.0
967,018 + -1.3
967,018 + +0.4
967,018 + -0.3
967,019 - +0.4
967,019 - +2.4
967,051 + +0.4
967,160 - AO356_04260 0.18 +3.0
967,223 + AO356_04260 0.22 -1.6
967,224 - AO356_04260 0.22 -0.6
967,224 - AO356_04260 0.22 +0.9
967,224 - AO356_04260 0.22 -0.4
967,224 - AO356_04260 0.22 +2.1
967,224 - AO356_04260 0.22 -0.8
967,224 - AO356_04260 0.22 -0.6
967,224 - AO356_04260 0.22 +0.3
967,225 + AO356_04260 0.23 -0.8
967,225 + AO356_04260 0.23 +1.1
967,252 + AO356_04260 0.25 -2.4
967,252 + AO356_04260 0.25 -2.0
967,252 + AO356_04260 0.25 +2.1
967,253 - AO356_04260 0.25 -3.2
967,253 - AO356_04260 0.25 +2.0
967,253 - AO356_04260 0.25 -1.5
967,253 - AO356_04260 0.25 -0.6
967,267 + AO356_04260 0.26 +1.3
967,267 + AO356_04260 0.26 -0.0
967,267 + AO356_04260 0.26 -1.3
967,267 + AO356_04260 0.26 -2.7
967,267 + AO356_04260 0.26 -1.1
967,268 - AO356_04260 0.26 -0.2
967,268 - AO356_04260 0.26 -2.6
967,330 + AO356_04260 0.31 +1.7
967,330 + AO356_04260 0.31 +1.2
967,330 + AO356_04260 0.31 -1.1
967,330 + AO356_04260 0.31 +0.8
967,330 + AO356_04260 0.31 -0.3
967,330 + AO356_04260 0.31 +0.1
967,330 + AO356_04260 0.31 +0.8
967,330 + AO356_04260 0.31 +1.2
967,330 + AO356_04260 0.31 +1.1
967,330 + AO356_04260 0.31 +0.5
967,330 + AO356_04260 0.31 +1.0
967,330 + AO356_04260 0.31 -0.9
967,331 - AO356_04260 0.31 +0.0
967,331 - AO356_04260 0.31 -2.7
967,331 - AO356_04260 0.31 +0.7
967,331 - AO356_04260 0.31 -0.1
967,331 - AO356_04260 0.31 -2.2
967,331 - AO356_04260 0.31 +1.5
967,331 - AO356_04260 0.31 +0.9
967,331 - AO356_04260 0.31 -0.6
967,331 - AO356_04260 0.31 +1.3
967,331 - AO356_04260 0.31 +0.9
967,331 - AO356_04260 0.31 +1.8
967,331 - AO356_04260 0.31 +1.5
967,331 - AO356_04260 0.31 -1.2
967,331 - AO356_04260 0.31 +1.0
967,331 - AO356_04260 0.31 +0.8
967,331 - AO356_04260 0.31 +0.1
967,331 - AO356_04260 0.31 -0.4
967,331 - AO356_04260 0.31 +1.0
967,552 - AO356_04260 0.47 +0.1
967,681 + AO356_04260 0.57 -2.2
967,682 - AO356_04260 0.57 +1.8
967,682 - AO356_04260 0.57 +2.4
967,682 - AO356_04260 0.57 -1.5
967,759 + AO356_04260 0.63 -1.1
967,769 + AO356_04260 0.64 +0.6
967,870 + AO356_04260 0.72 +0.5
967,870 + AO356_04260 0.72 +1.4
967,870 + AO356_04260 0.72 -2.2
967,870 + AO356_04260 0.72 -2.0
967,870 + AO356_04260 0.72 +1.1
967,871 - AO356_04260 0.72 +1.7
967,894 + AO356_04260 0.74 -0.2
967,894 + AO356_04260 0.74 -1.9
967,894 + AO356_04260 0.74 +0.7
967,933 + AO356_04260 0.77 +0.8
967,933 + AO356_04260 0.77 +0.1
967,933 + AO356_04260 0.77 +0.6
967,933 + AO356_04260 0.77 -0.6
967,934 - AO356_04260 0.77 -1.0
967,934 - AO356_04260 0.77 -0.5
967,934 - AO356_04260 0.77 +1.2
967,945 + AO356_04260 0.77 -1.5
967,945 + AO356_04260 0.77 -1.2
967,960 + AO356_04260 0.79 -1.0
967,960 + AO356_04260 0.79 -1.2
968,000 - AO356_04260 0.82 +1.0
968,032 + AO356_04260 0.84 +0.8
968,032 + AO356_04260 0.84 +1.4
968,033 - AO356_04260 0.84 -0.2
968,033 - AO356_04260 0.84 +1.7
968,033 - AO356_04260 0.84 +0.3
968,053 + AO356_04260 0.86 +1.4
968,053 + AO356_04260 0.86 +0.0
968,260 + -0.9
968,261 - -1.2
968,265 + -1.8
968,265 + +1.1
968,265 + -0.8
968,265 + -0.4
968,265 + +0.8
968,265 + +2.0
968,265 + -0.6
968,266 - -2.5
968,266 - +1.9
968,266 - +0.7
968,266 - -0.6
968,450 - -0.2
968,476 + +0.2
968,476 + +0.8
968,863 + AO356_04270 0.17 +0.9
968,863 + AO356_04270 0.17 -1.3
968,909 + AO356_04270 0.25 +0.0
969,117 + AO356_04270 0.58 +0.1
969,118 - AO356_04270 0.59 +2.1
969,118 - AO356_04270 0.59 +0.3

Or see this region's nucleotide sequence