Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03135

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_03125 and AO356_03130 are separated by 64 nucleotidesAO356_03130 and AO356_03135 are separated by 61 nucleotidesAO356_03135 and AO356_03140 overlap by 11 nucleotidesAO356_03140 and AO356_03145 are separated by 147 nucleotides AO356_03125: AO356_03125 - cytoplasmic protein, at 699,442 to 700,671 _03125 AO356_03130: AO356_03130 - hypothetical protein, at 700,736 to 700,954 _03130 AO356_03135: AO356_03135 - LysR family transcriptional regulator, at 701,016 to 701,906 _03135 AO356_03140: AO356_03140 - hypothetical protein, at 701,896 to 702,645 _03140 AO356_03145: AO356_03145 - MarR family transcriptional regulator, at 702,793 to 703,254 _03145 Position (kb) 701 702Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 700.147 kb on + strand, within AO356_03125at 700.313 kb on + strand, within AO356_03125at 700.313 kb on + strand, within AO356_03125at 700.314 kb on - strand, within AO356_03125at 700.314 kb on - strand, within AO356_03125at 700.314 kb on - strand, within AO356_03125at 700.365 kb on - strand, within AO356_03125at 700.365 kb on - strand, within AO356_03125at 700.365 kb on - strand, within AO356_03125at 700.365 kb on - strand, within AO356_03125at 700.365 kb on - strand, within AO356_03125at 700.496 kb on + strand, within AO356_03125at 700.496 kb on + strand, within AO356_03125at 700.496 kb on + strand, within AO356_03125at 700.496 kb on + strand, within AO356_03125at 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.699 kb on - strandat 700.723 kb on - strandat 700.925 kb on + strand, within AO356_03130at 700.926 kb on - strand, within AO356_03130at 700.926 kb on - strand, within AO356_03130at 700.931 kb on + strand, within AO356_03130at 700.931 kb on + strand, within AO356_03130at 700.931 kb on + strand, within AO356_03130at 700.931 kb on + strand, within AO356_03130at 700.931 kb on + strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.935 kb on + strandat 700.936 kb on - strandat 700.936 kb on - strandat 701.000 kb on - strandat 701.031 kb on + strandat 701.031 kb on + strandat 701.031 kb on + strandat 701.032 kb on - strandat 701.032 kb on - strandat 701.032 kb on - strandat 701.032 kb on - strandat 701.032 kb on - strandat 701.061 kb on + strandat 701.062 kb on - strandat 701.090 kb on + strandat 701.090 kb on + strandat 701.091 kb on - strandat 701.271 kb on + strand, within AO356_03135at 701.330 kb on + strand, within AO356_03135at 701.330 kb on + strand, within AO356_03135at 701.331 kb on - strand, within AO356_03135at 701.331 kb on - strand, within AO356_03135at 701.331 kb on - strand, within AO356_03135at 701.367 kb on + strand, within AO356_03135at 701.368 kb on - strand, within AO356_03135at 701.368 kb on - strand, within AO356_03135at 701.368 kb on - strand, within AO356_03135at 701.368 kb on - strand, within AO356_03135at 701.368 kb on - strand, within AO356_03135at 701.415 kb on + strand, within AO356_03135at 701.682 kb on + strand, within AO356_03135at 701.682 kb on + strand, within AO356_03135at 701.683 kb on - strand, within AO356_03135at 701.683 kb on - strand, within AO356_03135at 701.779 kb on + strand, within AO356_03135at 701.779 kb on + strand, within AO356_03135at 702.069 kb on - strand, within AO356_03140at 702.069 kb on - strand, within AO356_03140at 702.069 kb on - strand, within AO356_03140at 702.069 kb on - strand, within AO356_03140at 702.069 kb on - strand, within AO356_03140at 702.305 kb on + strand, within AO356_03140at 702.305 kb on + strand, within AO356_03140at 702.305 kb on + strand, within AO356_03140at 702.305 kb on + strand, within AO356_03140at 702.305 kb on + strand, within AO356_03140at 702.306 kb on - strand, within AO356_03140at 702.306 kb on - strand, within AO356_03140at 702.306 kb on - strand, within AO356_03140at 702.306 kb on - strand, within AO356_03140at 702.306 kb on - strand, within AO356_03140at 702.352 kb on - strand, within AO356_03140at 702.352 kb on - strand, within AO356_03140at 702.605 kb on - strandat 702.679 kb on + strandat 702.679 kb on + strandat 702.679 kb on + strandat 702.680 kb on - strandat 702.680 kb on - strandat 702.680 kb on - strandat 702.680 kb on - strandat 702.680 kb on - strandat 702.680 kb on - strandat 702.680 kb on - strandat 702.706 kb on + strandat 702.706 kb on + strandat 702.706 kb on + strandat 702.706 kb on + strandat 702.706 kb on + strandat 702.707 kb on - strandat 702.707 kb on - strandat 702.707 kb on - strandat 702.707 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
700,147 + AO356_03125 0.57 +0.2
700,313 + AO356_03125 0.71 +0.3
700,313 + AO356_03125 0.71 +1.7
700,314 - AO356_03125 0.71 -0.2
700,314 - AO356_03125 0.71 +2.6
700,314 - AO356_03125 0.71 -0.0
700,365 - AO356_03125 0.75 +0.5
700,365 - AO356_03125 0.75 +0.2
700,365 - AO356_03125 0.75 -0.0
700,365 - AO356_03125 0.75 +1.0
700,365 - AO356_03125 0.75 +0.8
700,496 + AO356_03125 0.86 +0.8
700,496 + AO356_03125 0.86 -0.6
700,496 + AO356_03125 0.86 -0.6
700,496 + AO356_03125 0.86 -0.1
700,698 + -2.6
700,698 + +1.3
700,698 + +0.2
700,698 + +1.7
700,698 + -1.4
700,698 + +1.5
700,698 + -1.0
700,698 + +1.3
700,698 + +1.6
700,698 + +1.1
700,699 - -0.4
700,723 - +0.6
700,925 + AO356_03130 0.86 +0.7
700,926 - AO356_03130 0.87 +1.3
700,926 - AO356_03130 0.87 +2.2
700,931 + AO356_03130 0.89 +0.5
700,931 + AO356_03130 0.89 -1.9
700,931 + AO356_03130 0.89 -0.4
700,931 + AO356_03130 0.89 +0.0
700,931 + AO356_03130 0.89 +1.0
700,932 - AO356_03130 0.89 +0.9
700,932 - AO356_03130 0.89 +0.7
700,932 - AO356_03130 0.89 +2.0
700,932 - AO356_03130 0.89 +0.6
700,932 - AO356_03130 0.89 +1.7
700,932 - AO356_03130 0.89 +1.2
700,935 + +1.6
700,936 - +0.5
700,936 - +0.4
701,000 - +0.5
701,031 + -1.3
701,031 + -2.0
701,031 + +0.7
701,032 - +0.3
701,032 - +1.2
701,032 - +0.8
701,032 - +2.0
701,032 - -1.3
701,061 + -1.0
701,062 - +0.7
701,090 + +1.8
701,090 + -1.7
701,091 - +1.8
701,271 + AO356_03135 0.29 -0.5
701,330 + AO356_03135 0.35 -0.7
701,330 + AO356_03135 0.35 -0.6
701,331 - AO356_03135 0.35 +2.3
701,331 - AO356_03135 0.35 -0.4
701,331 - AO356_03135 0.35 -0.0
701,367 + AO356_03135 0.39 +0.9
701,368 - AO356_03135 0.40 -0.8
701,368 - AO356_03135 0.40 +0.3
701,368 - AO356_03135 0.40 -0.3
701,368 - AO356_03135 0.40 +0.3
701,368 - AO356_03135 0.40 +1.0
701,415 + AO356_03135 0.45 -1.7
701,682 + AO356_03135 0.75 +0.4
701,682 + AO356_03135 0.75 +0.2
701,683 - AO356_03135 0.75 -1.7
701,683 - AO356_03135 0.75 -1.0
701,779 + AO356_03135 0.86 -2.4
701,779 + AO356_03135 0.86 +0.9
702,069 - AO356_03140 0.23 +0.5
702,069 - AO356_03140 0.23 -1.0
702,069 - AO356_03140 0.23 +0.7
702,069 - AO356_03140 0.23 +0.1
702,069 - AO356_03140 0.23 +1.5
702,305 + AO356_03140 0.55 -2.3
702,305 + AO356_03140 0.55 -1.1
702,305 + AO356_03140 0.55 -0.6
702,305 + AO356_03140 0.55 +2.3
702,305 + AO356_03140 0.55 -0.4
702,306 - AO356_03140 0.55 -2.0
702,306 - AO356_03140 0.55 +0.6
702,306 - AO356_03140 0.55 +0.0
702,306 - AO356_03140 0.55 +0.6
702,306 - AO356_03140 0.55 -0.9
702,352 - AO356_03140 0.61 +0.9
702,352 - AO356_03140 0.61 +1.0
702,605 - +0.8
702,679 + +0.5
702,679 + +0.5
702,679 + -0.9
702,680 - +0.8
702,680 - -0.6
702,680 - -0.5
702,680 - +1.7
702,680 - +0.6
702,680 - -1.3
702,680 - +2.2
702,706 + -0.4
702,706 + -0.3
702,706 + -2.8
702,706 + +0.2
702,706 + -0.7
702,707 - -1.2
702,707 - -0.2
702,707 - +2.5
702,707 - +0.5

Or see this region's nucleotide sequence