Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03125 and AO356_03130 are separated by 64 nucleotides AO356_03130 and AO356_03135 are separated by 61 nucleotides AO356_03135 and AO356_03140 overlap by 11 nucleotides
AO356_03125: AO356_03125 - cytoplasmic protein, at 699,442 to 700,671
_03125
AO356_03130: AO356_03130 - hypothetical protein, at 700,736 to 700,954
_03130
AO356_03135: AO356_03135 - LysR family transcriptional regulator, at 701,016 to 701,906
_03135
AO356_03140: AO356_03140 - hypothetical protein, at 701,896 to 702,645
_03140
Position (kb) 700
701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 699.959 kb on + strand, within AO356_03125 at 699.959 kb on + strand, within AO356_03125 at 699.960 kb on - strand, within AO356_03125 at 699.960 kb on - strand, within AO356_03125 at 700.147 kb on + strand, within AO356_03125 at 700.313 kb on + strand, within AO356_03125 at 700.313 kb on + strand, within AO356_03125 at 700.314 kb on - strand, within AO356_03125 at 700.314 kb on - strand, within AO356_03125 at 700.314 kb on - strand, within AO356_03125 at 700.365 kb on - strand, within AO356_03125 at 700.365 kb on - strand, within AO356_03125 at 700.365 kb on - strand, within AO356_03125 at 700.365 kb on - strand, within AO356_03125 at 700.365 kb on - strand, within AO356_03125 at 700.496 kb on + strand, within AO356_03125 at 700.496 kb on + strand, within AO356_03125 at 700.496 kb on + strand, within AO356_03125 at 700.496 kb on + strand, within AO356_03125 at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.699 kb on - strand at 700.723 kb on - strand at 700.925 kb on + strand, within AO356_03130 at 700.926 kb on - strand, within AO356_03130 at 700.926 kb on - strand, within AO356_03130 at 700.931 kb on + strand, within AO356_03130 at 700.931 kb on + strand, within AO356_03130 at 700.931 kb on + strand, within AO356_03130 at 700.931 kb on + strand, within AO356_03130 at 700.931 kb on + strand, within AO356_03130 at 700.932 kb on - strand, within AO356_03130 at 700.932 kb on - strand, within AO356_03130 at 700.932 kb on - strand, within AO356_03130 at 700.932 kb on - strand, within AO356_03130 at 700.932 kb on - strand, within AO356_03130 at 700.932 kb on - strand, within AO356_03130 at 700.935 kb on + strand at 700.936 kb on - strand at 700.936 kb on - strand at 701.000 kb on - strand at 701.031 kb on + strand at 701.031 kb on + strand at 701.031 kb on + strand at 701.032 kb on - strand at 701.032 kb on - strand at 701.032 kb on - strand at 701.032 kb on - strand at 701.032 kb on - strand at 701.061 kb on + strand at 701.062 kb on - strand at 701.090 kb on + strand at 701.090 kb on + strand at 701.091 kb on - strand at 701.271 kb on + strand, within AO356_03135 at 701.330 kb on + strand, within AO356_03135 at 701.330 kb on + strand, within AO356_03135 at 701.331 kb on - strand, within AO356_03135 at 701.331 kb on - strand, within AO356_03135 at 701.331 kb on - strand, within AO356_03135 at 701.367 kb on + strand, within AO356_03135 at 701.368 kb on - strand, within AO356_03135 at 701.368 kb on - strand, within AO356_03135 at 701.368 kb on - strand, within AO356_03135 at 701.368 kb on - strand, within AO356_03135 at 701.368 kb on - strand, within AO356_03135 at 701.415 kb on + strand, within AO356_03135 at 701.682 kb on + strand, within AO356_03135 at 701.682 kb on + strand, within AO356_03135 at 701.683 kb on - strand, within AO356_03135 at 701.683 kb on - strand, within AO356_03135 at 701.779 kb on + strand, within AO356_03135 at 701.779 kb on + strand, within AO356_03135
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 699,959 + AO356_03125 0.42 +0.3 699,959 + AO356_03125 0.42 +1.3 699,960 - AO356_03125 0.42 -0.2 699,960 - AO356_03125 0.42 +2.6 700,147 + AO356_03125 0.57 +0.2 700,313 + AO356_03125 0.71 +0.3 700,313 + AO356_03125 0.71 +1.7 700,314 - AO356_03125 0.71 -0.2 700,314 - AO356_03125 0.71 +2.6 700,314 - AO356_03125 0.71 -0.0 700,365 - AO356_03125 0.75 +0.5 700,365 - AO356_03125 0.75 +0.2 700,365 - AO356_03125 0.75 -0.0 700,365 - AO356_03125 0.75 +1.0 700,365 - AO356_03125 0.75 +0.8 700,496 + AO356_03125 0.86 +0.8 700,496 + AO356_03125 0.86 -0.6 700,496 + AO356_03125 0.86 -0.6 700,496 + AO356_03125 0.86 -0.1 700,698 + -2.6 700,698 + +1.3 700,698 + +0.2 700,698 + +1.7 700,698 + -1.4 700,698 + +1.5 700,698 + -1.0 700,698 + +1.3 700,698 + +1.6 700,698 + +1.1 700,699 - -0.4 700,723 - +0.6 700,925 + AO356_03130 0.86 +0.7 700,926 - AO356_03130 0.87 +1.3 700,926 - AO356_03130 0.87 +2.2 700,931 + AO356_03130 0.89 +0.5 700,931 + AO356_03130 0.89 -1.9 700,931 + AO356_03130 0.89 -0.4 700,931 + AO356_03130 0.89 +0.0 700,931 + AO356_03130 0.89 +1.0 700,932 - AO356_03130 0.89 +0.9 700,932 - AO356_03130 0.89 +0.7 700,932 - AO356_03130 0.89 +2.0 700,932 - AO356_03130 0.89 +0.6 700,932 - AO356_03130 0.89 +1.7 700,932 - AO356_03130 0.89 +1.2 700,935 + +1.6 700,936 - +0.5 700,936 - +0.4 701,000 - +0.5 701,031 + -1.3 701,031 + -2.0 701,031 + +0.7 701,032 - +0.3 701,032 - +1.2 701,032 - +0.8 701,032 - +2.0 701,032 - -1.3 701,061 + -1.0 701,062 - +0.7 701,090 + +1.8 701,090 + -1.7 701,091 - +1.8 701,271 + AO356_03135 0.29 -0.5 701,330 + AO356_03135 0.35 -0.7 701,330 + AO356_03135 0.35 -0.6 701,331 - AO356_03135 0.35 +2.3 701,331 - AO356_03135 0.35 -0.4 701,331 - AO356_03135 0.35 -0.0 701,367 + AO356_03135 0.39 +0.9 701,368 - AO356_03135 0.40 -0.8 701,368 - AO356_03135 0.40 +0.3 701,368 - AO356_03135 0.40 -0.3 701,368 - AO356_03135 0.40 +0.3 701,368 - AO356_03135 0.40 +1.0 701,415 + AO356_03135 0.45 -1.7 701,682 + AO356_03135 0.75 +0.4 701,682 + AO356_03135 0.75 +0.2 701,683 - AO356_03135 0.75 -1.7 701,683 - AO356_03135 0.75 -1.0 701,779 + AO356_03135 0.86 -2.4 701,779 + AO356_03135 0.86 +0.9
Or see this region's nucleotide sequence