Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03115

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03110 and AO356_03115 are separated by 490 nucleotidesAO356_03115 and AO356_03120 are separated by 142 nucleotides AO356_03110: AO356_03110 - RNA helicase, at 694,906 to 696,579 _03110 AO356_03115: AO356_03115 - spermidine synthase, at 697,070 to 697,825 _03115 AO356_03120: AO356_03120 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 697,968 to 699,314 _03120 Position (kb) 697 698Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 696.592 kb on - strandat 696.803 kb on - strandat 696.803 kb on - strandat 696.803 kb on - strandat 696.803 kb on - strandat 696.805 kb on - strandat 696.805 kb on - strandat 696.890 kb on + strandat 696.974 kb on + strandat 696.975 kb on - strandat 696.975 kb on - strandat 696.975 kb on - strandat 696.975 kb on - strandat 697.047 kb on - strandat 697.114 kb on - strandat 697.233 kb on + strand, within AO356_03115at 697.245 kb on + strand, within AO356_03115at 697.245 kb on + strand, within AO356_03115at 697.246 kb on - strand, within AO356_03115at 697.246 kb on - strand, within AO356_03115at 697.395 kb on + strand, within AO356_03115at 697.395 kb on + strand, within AO356_03115at 697.395 kb on + strand, within AO356_03115at 697.467 kb on + strand, within AO356_03115at 697.467 kb on + strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.665 kb on + strand, within AO356_03115at 697.665 kb on + strand, within AO356_03115at 697.665 kb on + strand, within AO356_03115at 697.665 kb on + strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.671 kb on + strand, within AO356_03115at 697.672 kb on - strand, within AO356_03115at 697.672 kb on - strand, within AO356_03115at 697.672 kb on - strand, within AO356_03115at 697.760 kb on + strandat 697.760 kb on + strandat 697.915 kb on + strandat 697.915 kb on + strandat 697.916 kb on - strandat 697.916 kb on - strandat 697.918 kb on + strandat 697.918 kb on + strandat 697.918 kb on + strandat 697.918 kb on + strandat 697.918 kb on + strandat 697.919 kb on - strandat 697.919 kb on - strandat 697.919 kb on - strandat 697.919 kb on - strandat 697.929 kb on + strandat 697.930 kb on - strandat 697.930 kb on - strandat 697.949 kb on - strandat 697.949 kb on - strandat 697.949 kb on - strandat 697.957 kb on + strandat 697.957 kb on + strandat 697.958 kb on - strandat 697.958 kb on - strandat 698.439 kb on + strand, within AO356_03120at 698.562 kb on + strand, within AO356_03120at 698.563 kb on - strand, within AO356_03120at 698.563 kb on - strand, within AO356_03120at 698.685 kb on + strand, within AO356_03120at 698.685 kb on + strand, within AO356_03120at 698.685 kb on + strand, within AO356_03120at 698.686 kb on - strand, within AO356_03120at 698.727 kb on + strand, within AO356_03120at 698.728 kb on - strand, within AO356_03120at 698.728 kb on - strand, within AO356_03120at 698.728 kb on - strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.731 kb on - strand, within AO356_03120at 698.731 kb on - strand, within AO356_03120

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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696,592 - +0.3
696,803 - +0.4
696,803 - -0.0
696,803 - +0.6
696,803 - +0.5
696,805 - -1.0
696,805 - -1.2
696,890 + +0.2
696,974 + +1.6
696,975 - +1.2
696,975 - +0.7
696,975 - +0.1
696,975 - +0.1
697,047 - -2.5
697,114 - -0.7
697,233 + AO356_03115 0.22 +1.4
697,245 + AO356_03115 0.23 +0.3
697,245 + AO356_03115 0.23 -0.7
697,246 - AO356_03115 0.23 +0.9
697,246 - AO356_03115 0.23 -0.4
697,395 + AO356_03115 0.43 +2.4
697,395 + AO356_03115 0.43 +1.7
697,395 + AO356_03115 0.43 -1.3
697,467 + AO356_03115 0.53 -0.6
697,467 + AO356_03115 0.53 +0.4
697,468 - AO356_03115 0.53 +2.2
697,468 - AO356_03115 0.53 -0.4
697,468 - AO356_03115 0.53 -0.7
697,468 - AO356_03115 0.53 +0.6
697,468 - AO356_03115 0.53 -0.1
697,468 - AO356_03115 0.53 +0.4
697,468 - AO356_03115 0.53 +0.2
697,468 - AO356_03115 0.53 +0.2
697,468 - AO356_03115 0.53 +1.6
697,468 - AO356_03115 0.53 +0.1
697,468 - AO356_03115 0.53 +0.4
697,665 + AO356_03115 0.79 -1.2
697,665 + AO356_03115 0.79 -0.3
697,665 + AO356_03115 0.79 -0.2
697,665 + AO356_03115 0.79 +3.5
697,666 - AO356_03115 0.79 -0.5
697,666 - AO356_03115 0.79 -2.2
697,666 - AO356_03115 0.79 -2.7
697,666 - AO356_03115 0.79 +1.0
697,666 - AO356_03115 0.79 +1.6
697,666 - AO356_03115 0.79 +0.8
697,666 - AO356_03115 0.79 -1.5
697,666 - AO356_03115 0.79 +1.1
697,671 + AO356_03115 0.79 +1.4
697,672 - AO356_03115 0.80 -0.6
697,672 - AO356_03115 0.80 -1.8
697,672 - AO356_03115 0.80 +2.9
697,760 + +0.2
697,760 + +0.8
697,915 + +0.8
697,915 + +0.4
697,916 - -0.2
697,916 - +0.3
697,918 + +0.3
697,918 + +1.7
697,918 + +1.8
697,918 + +1.9
697,918 + -1.9
697,919 - -2.3
697,919 - -0.7
697,919 - +1.1
697,919 - -1.1
697,929 + +1.2
697,930 - +1.0
697,930 - -0.5
697,949 - -0.5
697,949 - +0.9
697,949 - -3.2
697,957 + -1.7
697,957 + -1.8
697,958 - -0.2
697,958 - -1.5
698,439 + AO356_03120 0.35 -2.7
698,562 + AO356_03120 0.44 -0.9
698,563 - AO356_03120 0.44 +0.6
698,563 - AO356_03120 0.44 +0.9
698,685 + AO356_03120 0.53 +1.2
698,685 + AO356_03120 0.53 -0.0
698,685 + AO356_03120 0.53 +0.1
698,686 - AO356_03120 0.53 -0.4
698,727 + AO356_03120 0.56 +0.9
698,728 - AO356_03120 0.56 -2.3
698,728 - AO356_03120 0.56 -2.2
698,728 - AO356_03120 0.56 -1.0
698,730 + AO356_03120 0.57 +0.1
698,730 + AO356_03120 0.57 -0.2
698,730 + AO356_03120 0.57 +1.8
698,730 + AO356_03120 0.57 -0.1
698,731 - AO356_03120 0.57 -1.5
698,731 - AO356_03120 0.57 -0.1

Or see this region's nucleotide sequence