Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_311

Experiment: N2E2wt with N1B4m denitrifying repA

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_310 and Pf1N1B4_311 are separated by 141 nucleotidesPf1N1B4_311 and Pf1N1B4_312 are separated by 48 nucleotides Pf1N1B4_310 - UPF0028 protein YchK, at 363,216 to 364,256 _310 Pf1N1B4_311 - sensor histidine kinase, at 364,398 to 365,096 _311 Pf1N1B4_312 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 365,145 to 367,796 _312 Position (kb) 364 365 366Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 363.411 kb on + strand, within Pf1N1B4_310at 363.509 kb on + strand, within Pf1N1B4_310at 363.509 kb on + strand, within Pf1N1B4_310at 363.510 kb on - strand, within Pf1N1B4_310at 363.510 kb on - strand, within Pf1N1B4_310at 363.512 kb on + strand, within Pf1N1B4_310at 363.512 kb on + strand, within Pf1N1B4_310at 363.512 kb on + strand, within Pf1N1B4_310at 363.771 kb on + strand, within Pf1N1B4_310at 363.771 kb on + strandat 364.101 kb on + strand, within Pf1N1B4_310at 364.102 kb on - strand, within Pf1N1B4_310at 364.173 kb on + strandat 364.173 kb on + strandat 364.174 kb on - strandat 364.174 kb on - strandat 364.174 kb on - strandat 364.174 kb on - strandat 364.174 kb on - strandat 364.234 kb on - strandat 364.399 kb on + strandat 364.399 kb on + strandat 364.399 kb on + strandat 364.451 kb on + strandat 364.506 kb on + strand, within Pf1N1B4_311at 364.516 kb on + strand, within Pf1N1B4_311at 364.516 kb on + strand, within Pf1N1B4_311at 364.516 kb on + strand, within Pf1N1B4_311at 364.516 kb on + strand, within Pf1N1B4_311at 364.618 kb on + strand, within Pf1N1B4_311at 364.618 kb on + strand, within Pf1N1B4_311at 364.618 kb on + strand, within Pf1N1B4_311at 364.618 kb on + strand, within Pf1N1B4_311at 364.619 kb on - strand, within Pf1N1B4_311at 364.795 kb on + strand, within Pf1N1B4_311at 364.795 kb on + strand, within Pf1N1B4_311at 364.795 kb on + strand, within Pf1N1B4_311at 364.795 kb on + strand, within Pf1N1B4_311at 364.796 kb on - strand, within Pf1N1B4_311at 364.796 kb on - strand, within Pf1N1B4_311at 364.796 kb on - strand, within Pf1N1B4_311at 364.824 kb on + strand, within Pf1N1B4_311at 364.824 kb on + strand, within Pf1N1B4_311at 365.105 kb on - strandat 365.131 kb on + strandat 365.326 kb on + strandat 365.326 kb on + strandat 365.326 kb on + strandat 365.327 kb on - strandat 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strandat 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.512 kb on + strand, within Pf1N1B4_312at 365.513 kb on - strand, within Pf1N1B4_312at 365.513 kb on - strand, within Pf1N1B4_312at 365.513 kb on - strand, within Pf1N1B4_312at 365.513 kb on - strand, within Pf1N1B4_312at 365.513 kb on - strand, within Pf1N1B4_312at 365.513 kb on - strand, within Pf1N1B4_312at 365.513 kb on - strand, within Pf1N1B4_312at 365.664 kb on + strand, within Pf1N1B4_312at 365.665 kb on - strand, within Pf1N1B4_312at 365.665 kb on - strand, within Pf1N1B4_312at 365.665 kb on - strand, within Pf1N1B4_312at 365.679 kb on - strand, within Pf1N1B4_312at 365.679 kb on - strand, within Pf1N1B4_312at 365.680 kb on + strand, within Pf1N1B4_312at 365.680 kb on + strand, within Pf1N1B4_312at 365.680 kb on + strand, within Pf1N1B4_312at 365.680 kb on + strand, within Pf1N1B4_312at 365.681 kb on - strand, within Pf1N1B4_312at 365.808 kb on + strand, within Pf1N1B4_312at 365.809 kb on - strand, within Pf1N1B4_312

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N2E2wt with N1B4m denitrifying repA
remove
363,411 + Pf1N1B4_310 0.19 +0.1
363,509 + Pf1N1B4_310 0.28 +0.7
363,509 + Pf1N1B4_310 0.28 -0.4
363,510 - Pf1N1B4_310 0.28 +0.7
363,510 - Pf1N1B4_310 0.28 -0.3
363,512 + Pf1N1B4_310 0.28 +0.7
363,512 + Pf1N1B4_310 0.28 -1.3
363,512 + Pf1N1B4_310 0.28 +1.2
363,771 + Pf1N1B4_310 0.53 -0.9
363,771 + -0.3
364,101 + Pf1N1B4_310 0.85 -1.5
364,102 - Pf1N1B4_310 0.85 -1.7
364,173 + -2.6
364,173 + -1.1
364,174 - -2.7
364,174 - -2.9
364,174 - -0.2
364,174 - -0.3
364,174 - -2.4
364,234 - -1.1
364,399 + +0.7
364,399 + +1.2
364,399 + -1.5
364,451 + +0.8
364,506 + Pf1N1B4_311 0.15 -0.2
364,516 + Pf1N1B4_311 0.17 -0.8
364,516 + Pf1N1B4_311 0.17 -1.1
364,516 + Pf1N1B4_311 0.17 +0.7
364,516 + Pf1N1B4_311 0.17 +0.9
364,618 + Pf1N1B4_311 0.31 -0.3
364,618 + Pf1N1B4_311 0.31 -1.7
364,618 + Pf1N1B4_311 0.31 -0.8
364,618 + Pf1N1B4_311 0.31 +0.7
364,619 - Pf1N1B4_311 0.32 +0.7
364,795 + Pf1N1B4_311 0.57 -1.9
364,795 + Pf1N1B4_311 0.57 +0.7
364,795 + Pf1N1B4_311 0.57 +0.7
364,795 + Pf1N1B4_311 0.57 -0.3
364,796 - Pf1N1B4_311 0.57 -1.9
364,796 - Pf1N1B4_311 0.57 -2.0
364,796 - Pf1N1B4_311 0.57 -1.4
364,824 + Pf1N1B4_311 0.61 -0.3
364,824 + Pf1N1B4_311 0.61 +0.7
365,105 - +0.9
365,131 + +0.7
365,326 + -2.1
365,326 + +0.2
365,326 + +0.7
365,327 - -2.1
365,512 + Pf1N1B4_312 0.14 +1.5
365,512 + Pf1N1B4_312 0.14 -0.2
365,512 + Pf1N1B4_312 0.14 +0.7
365,512 + Pf1N1B4_312 0.14 +0.4
365,512 + -2.3
365,512 + Pf1N1B4_312 0.14 -2.3
365,512 + Pf1N1B4_312 0.14 -0.2
365,512 + Pf1N1B4_312 0.14 -2.1
365,512 + Pf1N1B4_312 0.14 -0.9
365,512 + Pf1N1B4_312 0.14 -1.6
365,512 + Pf1N1B4_312 0.14 -1.0
365,512 + Pf1N1B4_312 0.14 +0.7
365,512 + Pf1N1B4_312 0.14 +0.7
365,512 + Pf1N1B4_312 0.14 -3.2
365,512 + Pf1N1B4_312 0.14 -0.9
365,512 + Pf1N1B4_312 0.14 +2.1
365,513 - Pf1N1B4_312 0.14 -1.7
365,513 - Pf1N1B4_312 0.14 +0.7
365,513 - Pf1N1B4_312 0.14 -1.3
365,513 - Pf1N1B4_312 0.14 +0.1
365,513 - Pf1N1B4_312 0.14 +0.7
365,513 - Pf1N1B4_312 0.14 +0.7
365,513 - Pf1N1B4_312 0.14 +0.7
365,664 + Pf1N1B4_312 0.20 +1.7
365,665 - Pf1N1B4_312 0.20 +0.7
365,665 - Pf1N1B4_312 0.20 -2.8
365,665 - Pf1N1B4_312 0.20 -1.8
365,679 - Pf1N1B4_312 0.20 -3.1
365,679 - Pf1N1B4_312 0.20 +0.7
365,680 + Pf1N1B4_312 0.20 -0.0
365,680 + Pf1N1B4_312 0.20 -0.4
365,680 + Pf1N1B4_312 0.20 -2.8
365,680 + Pf1N1B4_312 0.20 +0.7
365,681 - Pf1N1B4_312 0.20 -0.8
365,808 + Pf1N1B4_312 0.25 +0.7
365,809 - Pf1N1B4_312 0.25 -0.3

Or see this region's nucleotide sequence