Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2936

Experiment: N2E2wt with N1B4m denitrifying repA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N2E2wt with N1B4m denitrifying repA
3,291,466	+		Pf1N1B4_2934	0.76	-0.5
3,291,466	+		Pf1N1B4_2934	0.76	-0.3
3,291,467	-		Pf1N1B4_2934	0.76	+0.6
3,291,499	+		Pf1N1B4_2934	0.81	-1.9
3,291,499	+		Pf1N1B4_2934	0.81	+0.7
3,291,499	+		Pf1N1B4_2934	0.81	+0.2
3,291,499	+		Pf1N1B4_2934	0.81	+0.7
3,291,499	+		Pf1N1B4_2934	0.81	-1.6
3,291,499	+		Pf1N1B4_2934	0.81	-2.1
3,291,499	+		Pf1N1B4_2934	0.81	+1.2
3,291,500	-		Pf1N1B4_2934	0.81	-0.2
3,291,500	-		Pf1N1B4_2934	0.81	-3.9
3,291,500	-		Pf1N1B4_2934	0.81	-1.6
3,291,500	-		Pf1N1B4_2934	0.81	+0.7
3,291,500	-		Pf1N1B4_2934	0.81	-0.0
3,291,500	-		Pf1N1B4_2934	0.81	-0.9
3,291,500	-		Pf1N1B4_2934	0.81	-0.8
3,291,500	-		Pf1N1B4_2934	0.81	+0.7
3,291,500	-				-0.2
3,291,500	-		Pf1N1B4_2934	0.81	-0.1
3,291,551	+		Pf1N1B4_2934	0.89	-3.2
3,291,551	+		Pf1N1B4_2934	0.89	-0.9
3,291,551	+		Pf1N1B4_2934	0.89	-0.3
3,291,552	-				-1.6
3,291,552	-		Pf1N1B4_2934	0.89	+0.7
3,291,552	-		Pf1N1B4_2934	0.89	-2.5
3,291,552	-		Pf1N1B4_2934	0.89	+0.3
3,291,569	+				-2.6
3,291,569	+				-2.5
3,291,569	+				-0.3
3,291,582	-				-1.0
3,291,582	-				-1.6
3,291,582	-				-1.3
3,291,657	+				+0.7
3,291,658	-				+0.7
3,291,663	-				-0.3
3,291,667	+				+0.7
3,291,667	+				-2.1
3,291,668	-				-0.9
3,291,685	+				-2.1
3,291,686	-				-3.8
3,291,686	-				+0.7
3,291,687	+				-1.9
3,291,687	+				+0.7
3,291,687	+				+0.7
3,291,687	+				-2.6
3,291,687	+				-1.1
3,291,687	+				+0.5
3,291,688	-				-0.9
3,291,688	-				+0.7
3,291,693	+				-2.3
3,291,693	+				-1.6
3,291,693	+				+0.7
3,291,693	+				-2.2
3,291,693	+				+1.2
3,291,693	+				+0.7
3,291,693	+				-1.5
3,291,693	+				+0.7
3,291,693	+				+0.7
3,291,694	-				-0.3
3,291,694	-				+0.7
3,291,694	-				-1.8
3,291,694	-				+0.7
3,291,740	+				+0.7
3,291,741	-				+0.7
3,291,741	-				+0.6
3,291,741	-				-0.9
3,291,851	+				-3.5
3,291,852	-				-1.3
3,291,852	-				-3.5
3,291,852	-				-0.5
3,292,010	+		Pf1N1B4_2935	0.38	+0.7
3,292,011	-		Pf1N1B4_2935	0.38	-0.4
3,292,011	-		Pf1N1B4_2935	0.38	-2.2
3,292,136	-		Pf1N1B4_2935	0.61	+0.7
3,292,277	+		Pf1N1B4_2935	0.86	+0.6
3,292,278	-		Pf1N1B4_2935	0.86	-4.4
3,292,301	+				+0.7
3,292,301	+				-2.5
3,292,302	-				+0.7
3,292,302	-				+0.2
3,292,302	-				-2.6
3,292,352	+				+0.7
3,292,352	+				+0.7
3,292,352	+				+0.7
3,292,352	+				+0.7
3,292,352	+				+0.4
3,292,352	+				-2.2
3,292,353	-				-1.6
3,292,353	-				+1.5
3,292,353	-				+0.2
3,292,353	-				-0.8
3,292,353	-				-0.0
3,292,390	+				-2.0
3,292,390	+				-0.8
3,292,391	-				-3.1
3,292,391	-				+0.7
3,292,508	+				-0.3
3,292,508	+				+3.7
3,292,516	+				-3.7
3,292,516	+				-3.7
3,292,517	-				-3.2
3,292,517	-				+0.7
3,292,569	+				-1.9
3,292,619	-				-3.4
3,292,631	+		Pf1N1B4_2936	0.10	+0.7
3,292,725	+		Pf1N1B4_2936	0.16	-2.5
3,292,726	-		Pf1N1B4_2936	0.16	-3.1
3,292,726	-		Pf1N1B4_2936	0.16	+1.9
3,292,770	+		Pf1N1B4_2936	0.18	+0.7
3,292,777	+		Pf1N1B4_2936	0.19	+0.7
3,292,778	-		Pf1N1B4_2936	0.19	-5.2
3,292,799	+		Pf1N1B4_2936	0.20	-1.2
3,292,799	+		Pf1N1B4_2936	0.20	-2.8
3,292,807	-		Pf1N1B4_2936	0.20	-1.1
3,293,066	-		Pf1N1B4_2936	0.35	-2.6
3,293,066	-		Pf1N1B4_2936	0.35	-1.0
3,293,253	-		Pf1N1B4_2936	0.46	-2.6
3,293,350	-		Pf1N1B4_2936	0.52	-2.4
3,293,350	-		Pf1N1B4_2936	0.52	-0.9
3,293,368	+				+0.7
3,293,368	+		Pf1N1B4_2936	0.53	-2.8
3,293,368	+		Pf1N1B4_2936	0.53	-2.9
3,293,368	+		Pf1N1B4_2936	0.53	-2.3
3,293,369	-		Pf1N1B4_2936	0.53	-1.6
3,293,443	-		Pf1N1B4_2936	0.57	-2.1
3,293,471	+		Pf1N1B4_2936	0.59	-1.5
3,293,472	-		Pf1N1B4_2936	0.59	+0.7
3,293,473	+		Pf1N1B4_2936	0.59	-0.9
3,293,473	+		Pf1N1B4_2936	0.59	+0.7
3,293,473	+		Pf1N1B4_2936	0.59	+0.7
3,293,473	+		Pf1N1B4_2936	0.59	-0.7
3,293,473	+		Pf1N1B4_2936	0.59	-3.3
3,293,473	+		Pf1N1B4_2936	0.59	-1.6
3,293,474	-		Pf1N1B4_2936	0.59	-0.6
3,293,474	-		Pf1N1B4_2936	0.59	-2.6
3,293,474	-		Pf1N1B4_2936	0.59	-3.2
3,293,474	-		Pf1N1B4_2936	0.59	-2.8
3,293,474	-		Pf1N1B4_2936	0.59	-0.8
3,293,474	-		Pf1N1B4_2936	0.59	-1.6
3,293,474	-		Pf1N1B4_2936	0.59	-0.8
3,293,474	-		Pf1N1B4_2936	0.59	-1.8
3,293,474	-		Pf1N1B4_2936	0.59	+0.1
3,293,474	-		Pf1N1B4_2936	0.59	-3.5
3,293,474	-		Pf1N1B4_2936	0.59	-1.8
3,293,676	+		Pf1N1B4_2936	0.71	-0.1
3,293,676	+		Pf1N1B4_2936	0.71	-2.3
3,293,677	-		Pf1N1B4_2936	0.71	-1.0
3,293,677	-		Pf1N1B4_2936	0.71	+3.3
3,293,677	-		Pf1N1B4_2936	0.71	+0.7
3,293,677	-		Pf1N1B4_2936	0.71	-4.2
3,293,689	+		Pf1N1B4_2936	0.72	-1.5
3,293,689	+		Pf1N1B4_2936	0.72	+0.7
3,293,690	-		Pf1N1B4_2936	0.72	+0.7
3,293,690	-		Pf1N1B4_2936	0.72	-2.1
3,293,690	-		Pf1N1B4_2936	0.72	-1.7
3,293,690	-		Pf1N1B4_2936	0.72	-0.3
3,293,690	-		Pf1N1B4_2936	0.72	-0.7
3,293,690	-		Pf1N1B4_2936	0.72	-2.9
3,293,690	-		Pf1N1B4_2936	0.72	+0.7
3,293,712	-		Pf1N1B4_2936	0.73	+0.7
3,293,734	-		Pf1N1B4_2936	0.74	-4.1
3,293,734	-		Pf1N1B4_2936	0.74	-0.3
3,293,734	-		Pf1N1B4_2936	0.74	-2.8
3,293,800	+		Pf1N1B4_2936	0.78	+0.7
3,293,800	+		Pf1N1B4_2936	0.78	+1.7
3,293,800	+		Pf1N1B4_2936	0.78	-2.5
3,293,800	+		Pf1N1B4_2936	0.78	-0.6
3,293,800	+		Pf1N1B4_2936	0.78	-0.3
3,293,800	+		Pf1N1B4_2936	0.78	+0.7
3,293,801	-		Pf1N1B4_2936	0.78	+0.7
3,293,801	-		Pf1N1B4_2936	0.78	-0.3
3,293,801	-		Pf1N1B4_2936	0.78	+0.7
3,293,801	-		Pf1N1B4_2936	0.78	+0.7
3,293,801	-		Pf1N1B4_2936	0.78	-2.6
3,293,801	-		Pf1N1B4_2936	0.78	-1.1
3,293,801	-		Pf1N1B4_2936	0.78	-2.0
3,293,890	+		Pf1N1B4_2936	0.83	-2.9
3,293,890	+		Pf1N1B4_2936	0.83	-4.0
3,293,890	+		Pf1N1B4_2936	0.83	-4.2
3,293,890	+				-3.5
3,293,891	-		Pf1N1B4_2936	0.83	-1.0
3,293,891	-		Pf1N1B4_2936	0.83	+0.1
3,293,914	-		Pf1N1B4_2936	0.85	-3.8
3,293,914	-		Pf1N1B4_2936	0.85	+0.7
3,293,914	-		Pf1N1B4_2936	0.85	-2.2
3,293,914	-		Pf1N1B4_2936	0.85	-1.0
3,293,999	+		Pf1N1B4_2936	0.90	+0.7
3,293,999	+		Pf1N1B4_2936	0.90	+0.7
3,294,000	-		Pf1N1B4_2936	0.90	-0.2
3,294,000	-				-1.1
3,294,002	-		Pf1N1B4_2936	0.90	-2.4
3,294,002	-		Pf1N1B4_2936	0.90	-2.5
3,294,002	-		Pf1N1B4_2936	0.90	-3.8
3,294,116	+				-1.1
3,294,117	-				-1.2
3,294,117	-				+0.7
3,294,256	-				-0.4
3,294,297	-				-2.9
3,294,297	-				+0.7
3,294,297	-				+0.7
3,294,651	+		Pf1N1B4_2937	0.67	-1.6
3,294,651	+		Pf1N1B4_2937	0.67	-3.4
3,294,651	+		Pf1N1B4_2937	0.67	-0.8
3,294,652	-		Pf1N1B4_2937	0.67	-0.1
3,294,652	-		Pf1N1B4_2937	0.67	-1.9
3,294,685	-		Pf1N1B4_2937	0.74	+0.7
3,294,685	-		Pf1N1B4_2937	0.74	-1.5
3,294,738	+		Pf1N1B4_2937	0.85	+0.3
3,294,738	+		Pf1N1B4_2937	0.85	-1.6
3,294,738	+		Pf1N1B4_2937	0.85	+0.7
3,294,739	-		Pf1N1B4_2937	0.85	+0.1
3,294,739	-		Pf1N1B4_2937	0.85	+0.2
3,294,739	-		Pf1N1B4_2937	0.85	-1.6
3,294,756	+		Pf1N1B4_2937	0.88	+0.7
3,294,757	-		Pf1N1B4_2937	0.88	+1.4
3,294,770	+				+0.8
3,294,770	+				-3.8
3,294,771	-				+0.7
3,294,771	-				-1.8
3,294,887	+				+0.9
3,294,888	-				+0.5
3,294,888	-				-0.5
3,295,131	+		Pf1N1B4_2938	0.89	+0.7
3,295,131	+		Pf1N1B4_2938	0.89	+0.7
3,295,161	+				-3.4