Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2160

Experiment: N2E2wt with N1B4m denitrifying repA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N2E2wt with N1B4m denitrifying repA
2,473,590	+		Pf1N1B4_2159	0.22	+0.8
2,473,590	+		Pf1N1B4_2159	0.22	-0.8
2,473,590	+		Pf1N1B4_2159	0.22	+0.8
2,473,590	+		Pf1N1B4_2159	0.22	+0.8
2,473,593	+		Pf1N1B4_2159	0.23	-4.1
2,473,593	+		Pf1N1B4_2159	0.23	+0.8
2,473,593	+		Pf1N1B4_2159	0.23	+0.5
2,473,594	-		Pf1N1B4_2159	0.23	-0.4
2,473,594	-		Pf1N1B4_2159	0.23	-0.3
2,473,594	-		Pf1N1B4_2159	0.23	-3.0
2,473,613	+		Pf1N1B4_2159	0.24	-1.4
2,473,613	+		Pf1N1B4_2159	0.24	-0.8
2,473,613	+		Pf1N1B4_2159	0.24	-0.8
2,473,613	+		Pf1N1B4_2159	0.24	-1.0
2,473,613	+		Pf1N1B4_2159	0.24	-2.2
2,473,614	-		Pf1N1B4_2159	0.24	-0.2
2,473,614	-		Pf1N1B4_2159	0.24	-1.5
2,473,614	-		Pf1N1B4_2159	0.24	-2.2
2,473,614	-		Pf1N1B4_2159	0.24	+1.1
2,473,614	-		Pf1N1B4_2159	0.24	-0.5
2,473,614	-		Pf1N1B4_2159	0.24	+0.8
2,473,621	+		Pf1N1B4_2159	0.25	-2.9
2,473,621	+		Pf1N1B4_2159	0.25	+0.8
2,473,621	+		Pf1N1B4_2159	0.25	-2.7
2,473,621	+		Pf1N1B4_2159	0.25	-0.2
2,473,621	+		Pf1N1B4_2159	0.25	-1.8
2,473,621	+		Pf1N1B4_2159	0.25	-1.8
2,473,621	+		Pf1N1B4_2159	0.25	+1.8
2,473,621	+		Pf1N1B4_2159	0.25	-0.8
2,473,621	+		Pf1N1B4_2159	0.25	-1.3
2,473,621	+		Pf1N1B4_2159	0.25	-2.2
2,473,621	+		Pf1N1B4_2159	0.25	-3.1
2,473,621	+		Pf1N1B4_2159	0.25	+0.8
2,473,621	+		Pf1N1B4_2159	0.25	+0.8
2,473,622	-		Pf1N1B4_2159	0.25	-1.2
2,473,622	-		Pf1N1B4_2159	0.25	+0.8
2,473,622	-		Pf1N1B4_2159	0.25	+1.3
2,473,622	-		Pf1N1B4_2159	0.25	+0.4
2,473,622	-		Pf1N1B4_2159	0.25	-2.2
2,473,622	-		Pf1N1B4_2159	0.25	+1.1
2,473,622	-		Pf1N1B4_2159	0.25	-0.1
2,473,622	-		Pf1N1B4_2159	0.25	+0.8
2,473,622	-		Pf1N1B4_2159	0.25	+0.8
2,473,622	-		Pf1N1B4_2159	0.25	-0.9
2,473,622	-		Pf1N1B4_2159	0.25	+0.8
2,473,622	-		Pf1N1B4_2159	0.25	-0.2
2,473,622	-		Pf1N1B4_2159	0.25	+0.8
2,473,622	-		Pf1N1B4_2159	0.25	+0.1
2,473,622	-		Pf1N1B4_2159	0.25	+0.8
2,473,622	-		Pf1N1B4_2159	0.25	-1.4
2,473,726	-		Pf1N1B4_2159	0.33	-1.3
2,473,804	+		Pf1N1B4_2159	0.40	-0.4
2,473,805	-		Pf1N1B4_2159	0.40	+0.8
2,473,805	-		Pf1N1B4_2159	0.40	-3.6
2,473,892	+				+0.8
2,473,892	+		Pf1N1B4_2159	0.47	+0.8
2,473,893	-		Pf1N1B4_2159	0.47	-0.2
2,473,893	-		Pf1N1B4_2159	0.47	+0.8
2,473,893	-		Pf1N1B4_2159	0.47	-3.4
2,473,893	-		Pf1N1B4_2159	0.47	+0.8
2,473,893	-		Pf1N1B4_2159	0.47	-2.2
2,474,011	+		Pf1N1B4_2159	0.56	-0.6
2,474,011	+		Pf1N1B4_2159	0.56	+0.8
2,474,011	+		Pf1N1B4_2159	0.56	-1.2
2,474,011	+		Pf1N1B4_2159	0.56	-1.8
2,474,011	+		Pf1N1B4_2159	0.56	+0.8
2,474,011	+		Pf1N1B4_2159	0.56	-1.1
2,474,012	-		Pf1N1B4_2159	0.56	-0.7
2,474,012	-		Pf1N1B4_2159	0.56	+0.8
2,474,030	+		Pf1N1B4_2159	0.58	-2.0
2,474,067	+		Pf1N1B4_2159	0.61	+0.8
2,474,096	+		Pf1N1B4_2159	0.63	+0.8
2,474,097	-		Pf1N1B4_2159	0.63	-0.2
2,474,224	+		Pf1N1B4_2159	0.73	+0.8
2,474,224	+		Pf1N1B4_2159	0.73	+0.8
2,474,224	+		Pf1N1B4_2159	0.73	-2.2
2,474,225	-		Pf1N1B4_2159	0.73	-2.2
2,474,225	-		Pf1N1B4_2159	0.73	+0.8
2,474,235	-		Pf1N1B4_2159	0.74	-0.5
2,474,292	+		Pf1N1B4_2159	0.79	-0.0
2,474,385	+		Pf1N1B4_2159	0.86	+0.6
2,474,385	+		Pf1N1B4_2159	0.86	-2.2
2,474,386	-		Pf1N1B4_2159	0.86	+0.9
2,474,386	-		Pf1N1B4_2159	0.86	-1.4
2,474,468	-				-0.0
2,474,508	-				+0.8
2,474,541	+				-1.5
2,474,766	+		Pf1N1B4_2160	0.24	-1.2
2,474,767	-		Pf1N1B4_2160	0.24	-1.3
2,475,011	+		Pf1N1B4_2160	0.53	-0.8
2,475,011	+		Pf1N1B4_2160	0.53	+0.8
2,475,011	+		Pf1N1B4_2160	0.53	-1.6
2,475,012	-		Pf1N1B4_2160	0.53	-0.2
2,475,033	+		Pf1N1B4_2160	0.55	-1.2
2,475,033	+		Pf1N1B4_2160	0.55	+0.8
2,475,034	-		Pf1N1B4_2160	0.56	-2.2
2,475,034	-		Pf1N1B4_2160	0.56	-1.2
2,475,034	-		Pf1N1B4_2160	0.56	+0.8
2,475,070	-		Pf1N1B4_2160	0.60	+0.8
2,475,163	+		Pf1N1B4_2160	0.71	-2.4
2,475,164	-		Pf1N1B4_2160	0.71	-0.2
2,475,333	+				-1.5
2,475,333	+				+0.8
2,475,333	+				+0.8
2,475,334	-				+0.2
2,475,334	-				-1.9
2,475,336	+				-1.3
2,475,336	+				-2.8
2,475,411	+				-1.5
2,475,411	+				+0.8
2,475,412	-				-0.4
2,475,412	-				-2.4
2,475,412	-				+0.8
2,475,421	+				-1.3
2,475,421	+				-2.4
2,475,421	+				-1.9
2,475,421	+				+0.8
2,475,421	+				-0.7
2,475,421	+				+0.1
2,475,422	-				-1.2
2,475,422	-				-2.4
2,475,422	-				+0.8
2,475,422	-				+0.3
2,475,422	-				+0.8
2,475,447	+				-1.8
2,475,447	+				-2.4
2,475,447	+				-1.0
2,475,447	+				-0.2
2,475,447	+				+0.1
2,475,447	+				+0.8
2,475,447	+				+0.8
2,475,447	+				+0.8
2,475,447	+				-2.7
2,475,447	+				-0.6
2,475,447	+				-0.2
2,475,447	+				+0.8
2,475,447	+				-1.1
2,475,447	+				+0.8
2,475,447	+				-0.7
2,475,447	+				+0.8
2,475,447	+				-0.8
2,475,447	+				-3.0
2,475,447	+				-0.1
2,475,448	-				-2.1
2,475,448	-				-1.5
2,475,448	-				+0.8
2,475,448	-				-0.7
2,475,448	-				+0.8
2,475,448	-				-0.8
2,475,448	-				-0.6
2,475,448	-				+2.8
2,475,448	-				-2.8
2,475,448	-				+1.4
2,475,448	-				-1.5
2,475,448	-				+0.8
2,475,448	-				+0.8
2,475,448	-				+1.1
2,475,448	-				-2.2
2,475,448	-				-1.8
2,475,451	+				-2.0
2,475,451	+				-1.5
2,475,451	+				-2.5
2,475,451	+				-1.5
2,475,451	+				+0.8
2,475,451	+				+0.8
2,475,451	+				-0.2
2,475,451	+				+0.8
2,475,451	+				-0.6
2,475,451	+				+1.6
2,475,452	-				+0.8
2,475,452	-				+0.8
2,475,452	-				-2.9
2,475,452	-				-1.8
2,475,452	-				-1.2
2,475,452	-				-0.8
2,475,452	-				+1.6
2,475,452	-				+0.6
2,475,452	-				+0.8
2,475,606	+		Pf1N1B4_2161	0.12	-1.9
2,475,606	+		Pf1N1B4_2161	0.12	+0.8
2,475,606	+		Pf1N1B4_2161	0.12	-2.1
2,475,606	+		Pf1N1B4_2161	0.12	-0.1
2,475,607	-		Pf1N1B4_2161	0.13	-2.9
2,475,607	-		Pf1N1B4_2161	0.13	-2.5
2,475,607	-		Pf1N1B4_2161	0.13	-2.5
2,475,610	+		Pf1N1B4_2161	0.13	-3.5
2,475,610	+		Pf1N1B4_2161	0.13	+0.0
2,475,610	+		Pf1N1B4_2161	0.13	-1.4
2,475,610	+		Pf1N1B4_2161	0.13	-2.3
2,475,611	-		Pf1N1B4_2161	0.13	+0.8
2,475,637	+		Pf1N1B4_2161	0.15	-1.5
2,475,637	+		Pf1N1B4_2161	0.15	+0.8
2,475,640	+		Pf1N1B4_2161	0.15	-0.3
2,475,640	+		Pf1N1B4_2161	0.15	-2.0
2,475,640	+		Pf1N1B4_2161	0.15	-2.4
2,475,640	+		Pf1N1B4_2161	0.15	+0.7
2,475,641	-		Pf1N1B4_2161	0.15	+0.8
2,475,655	+		Pf1N1B4_2161	0.16	-1.5
2,475,656	-		Pf1N1B4_2161	0.16	-4.1
2,475,715	+		Pf1N1B4_2161	0.21	+0.8
2,475,865	+		Pf1N1B4_2161	0.33	-1.1
2,475,914	-		Pf1N1B4_2161	0.37	-1.7
2,475,931	-		Pf1N1B4_2161	0.38	+0.2
2,476,196	-		Pf1N1B4_2161	0.59	-1.2
2,476,309	+		Pf1N1B4_2161	0.68	-1.6