Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1884

Experiment: N2E2wt with N1B4m denitrifying repA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N2E2wt with N1B4m denitrifying repA
2,154,244	-		Pf1N1B4_1883	0.41	-0.1
2,154,271	-		Pf1N1B4_1883	0.43	+1.2
2,154,271	-		Pf1N1B4_1883	0.43	+0.7
2,154,271	-		Pf1N1B4_1883	0.43	-2.9
2,154,310	+		Pf1N1B4_1883	0.46	-1.8
2,154,310	+		Pf1N1B4_1883	0.46	-2.8
2,154,311	-		Pf1N1B4_1883	0.46	-2.6
2,154,311	-		Pf1N1B4_1883	0.46	+0.7
2,154,311	-		Pf1N1B4_1883	0.46	+0.7
2,154,319	+		Pf1N1B4_1883	0.46	-0.3
2,154,320	-		Pf1N1B4_1883	0.46	-1.3
2,154,364	+		Pf1N1B4_1883	0.49	+0.7
2,154,365	-		Pf1N1B4_1883	0.49	+0.3
2,154,388	+		Pf1N1B4_1883	0.50	-2.6
2,154,388	+		Pf1N1B4_1883	0.50	-2.5
2,154,445	+		Pf1N1B4_1883	0.54	-2.6
2,154,445	+		Pf1N1B4_1883	0.54	+0.7
2,154,445	+		Pf1N1B4_1883	0.54	-0.6
2,154,445	+		Pf1N1B4_1883	0.54	-0.1
2,154,446	-		Pf1N1B4_1883	0.54	+1.1
2,154,446	-		Pf1N1B4_1883	0.54	+0.8
2,154,446	-		Pf1N1B4_1883	0.54	+1.0
2,154,446	-		Pf1N1B4_1883	0.54	-0.7
2,154,446	-		Pf1N1B4_1883	0.54	+0.6
2,154,446	-		Pf1N1B4_1883	0.54	+1.1
2,154,446	-		Pf1N1B4_1883	0.54	-2.1
2,154,446	-		Pf1N1B4_1883	0.54	+0.9
2,154,456	+		Pf1N1B4_1883	0.55	-1.3
2,154,456	+		Pf1N1B4_1883	0.55	-2.1
2,154,457	-		Pf1N1B4_1883	0.55	-3.3
2,154,457	-		Pf1N1B4_1883	0.55	-1.7
2,154,457	-		Pf1N1B4_1883	0.55	-0.1
2,154,457	-		Pf1N1B4_1883	0.55	-2.2
2,154,457	-		Pf1N1B4_1883	0.55	-1.1
2,154,457	-		Pf1N1B4_1883	0.55	-1.5
2,154,457	-		Pf1N1B4_1883	0.55	-0.4
2,154,457	-		Pf1N1B4_1883	0.55	+0.7
2,154,557	+		Pf1N1B4_1883	0.61	-0.1
2,154,575	+				+0.7
2,154,610	+		Pf1N1B4_1883	0.64	+0.2
2,154,611	-		Pf1N1B4_1883	0.64	-0.7
2,154,611	-		Pf1N1B4_1883	0.64	-0.1
2,154,663	+		Pf1N1B4_1883	0.67	+0.7
2,154,663	+		Pf1N1B4_1883	0.67	-0.2
2,154,663	+		Pf1N1B4_1883	0.67	-3.1
2,154,663	+		Pf1N1B4_1883	0.67	-1.0
2,154,663	+		Pf1N1B4_1883	0.67	-0.1
2,154,663	+		Pf1N1B4_1883	0.67	-0.3
2,154,663	+		Pf1N1B4_1883	0.67	-0.8
2,154,663	+		Pf1N1B4_1883	0.67	-0.3
2,154,663	+		Pf1N1B4_1883	0.67	+0.2
2,154,663	+		Pf1N1B4_1883	0.67	+1.5
2,154,663	+		Pf1N1B4_1883	0.67	-1.6
2,154,663	+		Pf1N1B4_1883	0.67	-3.1
2,154,664	-		Pf1N1B4_1883	0.67	-2.6
2,154,664	-		Pf1N1B4_1883	0.67	-0.3
2,154,664	-		Pf1N1B4_1883	0.67	-0.7
2,154,664	-		Pf1N1B4_1883	0.67	-2.7
2,154,664	-		Pf1N1B4_1883	0.67	+0.1
2,154,664	-		Pf1N1B4_1883	0.67	-0.5
2,154,664	-		Pf1N1B4_1883	0.67	-1.8
2,154,664	-		Pf1N1B4_1883	0.67	-0.1
2,154,664	-		Pf1N1B4_1883	0.67	-1.9
2,154,664	-		Pf1N1B4_1883	0.67	+1.2
2,154,664	-		Pf1N1B4_1883	0.67	-1.9
2,154,664	-		Pf1N1B4_1883	0.67	-1.7
2,154,664	-		Pf1N1B4_1883	0.67	-2.6
2,154,664	-		Pf1N1B4_1883	0.67	-1.9
2,154,664	-		Pf1N1B4_1883	0.67	-2.0
2,154,876	+		Pf1N1B4_1883	0.81	-1.3
2,154,877	-		Pf1N1B4_1883	0.81	+0.2
2,154,891	+		Pf1N1B4_1883	0.81	-2.4
2,154,939	-		Pf1N1B4_1883	0.84	-2.5
2,155,164	-				+0.4
2,155,204	+				+0.7
2,155,204	+				+0.1
2,155,204	+				+0.7
2,155,204	+				+0.1
2,155,204	+				+0.7
2,155,205	-				-2.6
2,155,205	-				+1.7
2,155,205	-				+0.7
2,155,205	-				+0.3
2,155,205	-				+0.7
2,155,205	-				-3.0
2,155,206	+				-2.3
2,155,222	+				+0.7
2,155,222	+				-0.1
2,155,222	+				+0.7
2,155,223	-				+0.7
2,155,223	-				+0.7
2,155,223	-				-0.6
2,155,223	-				-1.1
2,155,223	-				+0.7
2,155,223	-				+0.4
2,155,223	-				+0.4
2,155,223	-				-1.4
2,155,223	-				-1.3
2,155,223	-				-0.3
2,155,252	+				-1.3
2,155,253	-				+0.2
2,155,253	-				+0.2
2,155,375	+				+0.1
2,155,409	+		Pf1N1B4_1884	0.12	+0.7
2,155,410	-				-2.1
2,155,410	-		Pf1N1B4_1884	0.12	+1.4
2,155,446	+		Pf1N1B4_1884	0.14	-0.4
2,155,447	-		Pf1N1B4_1884	0.14	+0.7
2,155,447	-		Pf1N1B4_1884	0.14	+0.7
2,155,926	-		Pf1N1B4_1884	0.40	-3.0
2,155,959	-		Pf1N1B4_1884	0.42	+0.7
2,155,960	+		Pf1N1B4_1884	0.42	-1.4
2,155,960	+		Pf1N1B4_1884	0.42	-2.1
2,155,960	+		Pf1N1B4_1884	0.42	+0.2
2,155,960	+		Pf1N1B4_1884	0.42	+0.7
2,155,960	+		Pf1N1B4_1884	0.42	+1.9
2,155,960	+		Pf1N1B4_1884	0.42	-1.7
2,155,960	+		Pf1N1B4_1884	0.42	+2.6
2,155,960	+		Pf1N1B4_1884	0.42	-1.6
2,155,961	-		Pf1N1B4_1884	0.42	+0.7
2,155,961	-		Pf1N1B4_1884	0.42	+0.9
2,155,961	-		Pf1N1B4_1884	0.42	-2.1
2,155,961	-		Pf1N1B4_1884	0.42	+0.8
2,155,961	-		Pf1N1B4_1884	0.42	+0.7
2,155,961	-		Pf1N1B4_1884	0.42	-0.2
2,155,961	-		Pf1N1B4_1884	0.42	+1.3
2,155,961	-		Pf1N1B4_1884	0.42	+0.4
2,155,961	-		Pf1N1B4_1884	0.42	+0.6
2,155,961	-		Pf1N1B4_1884	0.42	-0.2
2,155,961	-		Pf1N1B4_1884	0.42	-0.5
2,156,035	-		Pf1N1B4_1884	0.46	+0.5
2,156,037	+		Pf1N1B4_1884	0.47	-0.4
2,156,037	+		Pf1N1B4_1884	0.47	+0.6
2,156,038	-		Pf1N1B4_1884	0.47	+0.2
2,156,250	-		Pf1N1B4_1884	0.58	+0.7
2,156,348	+				+0.7
2,156,607	+		Pf1N1B4_1884	0.78	+0.6
2,156,608	-		Pf1N1B4_1884	0.78	-2.4
2,156,646	+		Pf1N1B4_1884	0.81	-2.1
2,156,646	+		Pf1N1B4_1884	0.81	+2.6
2,156,647	-		Pf1N1B4_1884	0.81	-0.4
2,156,647	-		Pf1N1B4_1884	0.81	-2.4
2,156,684	-		Pf1N1B4_1884	0.83	-0.3
2,156,936	+				+0.7
2,156,937	-				+0.7
2,156,937	-				-0.5
2,156,937	-				-2.6
2,156,937	-				-1.6
2,156,937	-				+0.7
2,156,937	-				+1.5
2,156,952	-				-1.0
2,157,014	+				+0.7
2,157,014	+				+2.1
2,157,014	+				-3.1
2,157,015	-				-0.8
2,157,015	-				-3.3
2,157,015	-				-0.7
2,157,222	+		Pf1N1B4_1885	0.16	+0.7
2,157,222	+		Pf1N1B4_1885	0.16	-3.2
2,157,222	+		Pf1N1B4_1885	0.16	+1.5
2,157,222	+		Pf1N1B4_1885	0.16	+0.7
2,157,222	+		Pf1N1B4_1885	0.16	+0.7
2,157,222	+		Pf1N1B4_1885	0.16	-0.5
2,157,222	+		Pf1N1B4_1885	0.16	-0.4
2,157,222	+		Pf1N1B4_1885	0.16	+0.2
2,157,223	-		Pf1N1B4_1885	0.16	-4.4
2,157,223	-		Pf1N1B4_1885	0.16	-0.7
2,157,223	-		Pf1N1B4_1885	0.16	-0.1
2,157,223	-		Pf1N1B4_1885	0.16	-0.7
2,157,223	-		Pf1N1B4_1885	0.16	+0.2
2,157,223	-		Pf1N1B4_1885	0.16	+0.6
2,157,223	-		Pf1N1B4_1885	0.16	-2.4
2,157,223	-		Pf1N1B4_1885	0.16	-0.1
2,157,223	-		Pf1N1B4_1885	0.16	-0.4
2,157,223	-		Pf1N1B4_1885	0.16	-0.5
2,157,279	-		Pf1N1B4_1885	0.20	+0.2
2,157,333	-		Pf1N1B4_1885	0.24	-0.2
2,157,333	-		Pf1N1B4_1885	0.24	-2.6
2,157,435	-		Pf1N1B4_1885	0.32	-0.1
2,157,549	-		Pf1N1B4_1885	0.40	+0.5
2,157,719	-		Pf1N1B4_1885	0.53	-0.6
2,157,719	-		Pf1N1B4_1885	0.53	-0.2
2,157,852	+		Pf1N1B4_1885	0.63	+0.7