Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1128

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1127 and Ga0059261_1128 are separated by 163 nucleotidesGa0059261_1128 and Ga0059261_1129 are separated by 143 nucleotides Ga0059261_1127: Ga0059261_1127 - Alginate export, at 1,152,137 to 1,153,567 _1127 Ga0059261_1128: Ga0059261_1128 - Sigma-70 region 2, at 1,153,731 to 1,154,612 _1128 Ga0059261_1129: Ga0059261_1129 - hypothetical protein, at 1,154,756 to 1,155,745 _1129 Position (kb) 1153 1154 1155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1152.831 kb on + strand, within Ga0059261_1127at 1152.831 kb on + strand, within Ga0059261_1127at 1152.831 kb on + strand, within Ga0059261_1127at 1152.831 kb on + strand, within Ga0059261_1127at 1152.831 kb on + strand, within Ga0059261_1127at 1152.831 kb on + strand, within Ga0059261_1127at 1152.831 kb on + strand, within Ga0059261_1127at 1152.831 kb on + strand, within Ga0059261_1127at 1152.831 kb on + strand, within Ga0059261_1127at 1152.831 kb on + strand, within Ga0059261_1127at 1152.832 kb on - strand, within Ga0059261_1127at 1152.832 kb on - strand, within Ga0059261_1127at 1152.832 kb on - strand, within Ga0059261_1127at 1152.832 kb on - strand, within Ga0059261_1127at 1152.832 kb on - strand, within Ga0059261_1127at 1152.832 kb on - strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.837 kb on + strand, within Ga0059261_1127at 1152.838 kb on - strand, within Ga0059261_1127at 1152.838 kb on - strand, within Ga0059261_1127at 1152.838 kb on - strand, within Ga0059261_1127at 1152.838 kb on - strand, within Ga0059261_1127at 1152.838 kb on - strand, within Ga0059261_1127at 1152.838 kb on - strand, within Ga0059261_1127at 1152.838 kb on - strand, within Ga0059261_1127at 1152.838 kb on - strand, within Ga0059261_1127at 1152.940 kb on + strand, within Ga0059261_1127at 1152.940 kb on + strand, within Ga0059261_1127at 1152.941 kb on - strand, within Ga0059261_1127at 1153.037 kb on - strand, within Ga0059261_1127at 1153.139 kb on - strand, within Ga0059261_1127at 1153.164 kb on + strand, within Ga0059261_1127at 1153.164 kb on + strand, within Ga0059261_1127at 1153.164 kb on + strand, within Ga0059261_1127at 1153.165 kb on - strand, within Ga0059261_1127at 1153.165 kb on - strand, within Ga0059261_1127at 1153.165 kb on - strand, within Ga0059261_1127at 1153.165 kb on - strand, within Ga0059261_1127at 1153.165 kb on - strand, within Ga0059261_1127at 1153.172 kb on + strand, within Ga0059261_1127at 1153.172 kb on + strand, within Ga0059261_1127at 1153.173 kb on - strand, within Ga0059261_1127at 1153.173 kb on - strand, within Ga0059261_1127at 1153.173 kb on - strand, within Ga0059261_1127at 1153.194 kb on - strand, within Ga0059261_1127at 1153.230 kb on + strand, within Ga0059261_1127at 1153.231 kb on - strand, within Ga0059261_1127at 1153.231 kb on - strand, within Ga0059261_1127at 1153.281 kb on + strand, within Ga0059261_1127at 1153.281 kb on + strand, within Ga0059261_1127at 1153.281 kb on + strand, within Ga0059261_1127at 1153.281 kb on + strand, within Ga0059261_1127at 1153.281 kb on + strand, within Ga0059261_1127at 1153.281 kb on + strand, within Ga0059261_1127at 1153.281 kb on + strand, within Ga0059261_1127at 1153.282 kb on - strand, within Ga0059261_1127at 1153.597 kb on - strandat 1153.597 kb on - strandat 1153.598 kb on + strandat 1153.598 kb on + strandat 1153.598 kb on + strandat 1153.598 kb on + strandat 1153.599 kb on - strandat 1153.599 kb on - strandat 1153.599 kb on - strandat 1153.848 kb on + strand, within Ga0059261_1128at 1153.848 kb on + strand, within Ga0059261_1128at 1153.849 kb on - strand, within Ga0059261_1128at 1153.849 kb on - strand, within Ga0059261_1128at 1153.871 kb on + strand, within Ga0059261_1128at 1153.871 kb on + strand, within Ga0059261_1128at 1153.871 kb on + strand, within Ga0059261_1128at 1153.872 kb on - strand, within Ga0059261_1128at 1153.872 kb on - strand, within Ga0059261_1128at 1153.872 kb on - strand, within Ga0059261_1128at 1153.872 kb on - strand, within Ga0059261_1128at 1154.099 kb on + strand, within Ga0059261_1128at 1154.099 kb on + strand, within Ga0059261_1128at 1154.099 kb on + strand, within Ga0059261_1128at 1154.099 kb on + strand, within Ga0059261_1128at 1154.100 kb on - strand, within Ga0059261_1128at 1154.101 kb on + strand, within Ga0059261_1128at 1154.101 kb on + strand, within Ga0059261_1128at 1154.101 kb on + strand, within Ga0059261_1128at 1154.101 kb on + strand, within Ga0059261_1128at 1154.101 kb on + strand, within Ga0059261_1128at 1154.101 kb on + strand, within Ga0059261_1128at 1154.102 kb on - strand, within Ga0059261_1128at 1154.102 kb on - strand, within Ga0059261_1128at 1154.140 kb on + strand, within Ga0059261_1128at 1154.140 kb on + strand, within Ga0059261_1128at 1154.140 kb on + strand, within Ga0059261_1128at 1154.140 kb on + strand, within Ga0059261_1128at 1154.141 kb on - strand, within Ga0059261_1128at 1154.141 kb on - strand, within Ga0059261_1128at 1154.141 kb on - strandat 1154.141 kb on - strand, within Ga0059261_1128at 1154.249 kb on - strand, within Ga0059261_1128at 1154.374 kb on + strand, within Ga0059261_1128at 1154.374 kb on + strand, within Ga0059261_1128at 1154.374 kb on + strand, within Ga0059261_1128at 1154.374 kb on + strand, within Ga0059261_1128at 1154.374 kb on + strand, within Ga0059261_1128at 1154.374 kb on + strand, within Ga0059261_1128at 1154.374 kb on + strand, within Ga0059261_1128at 1154.375 kb on - strand, within Ga0059261_1128at 1154.375 kb on - strand, within Ga0059261_1128at 1154.375 kb on - strand, within Ga0059261_1128at 1154.375 kb on - strand, within Ga0059261_1128at 1154.375 kb on - strand, within Ga0059261_1128at 1154.375 kb on - strand, within Ga0059261_1128at 1154.375 kb on - strand, within Ga0059261_1128at 1154.375 kb on - strand, within Ga0059261_1128at 1154.375 kb on - strand, within Ga0059261_1128at 1154.375 kb on - strand, within Ga0059261_1128at 1154.394 kb on + strand, within Ga0059261_1128at 1154.394 kb on + strand, within Ga0059261_1128at 1154.394 kb on + strand, within Ga0059261_1128at 1154.395 kb on - strandat 1154.395 kb on - strand, within Ga0059261_1128at 1154.446 kb on + strand, within Ga0059261_1128at 1154.446 kb on + strand, within Ga0059261_1128at 1154.447 kb on - strand, within Ga0059261_1128at 1154.447 kb on - strand, within Ga0059261_1128at 1154.447 kb on - strand, within Ga0059261_1128at 1154.574 kb on - strandat 1154.574 kb on - strandat 1154.687 kb on + strandat 1154.794 kb on + strandat 1154.796 kb on + strandat 1154.796 kb on + strandat 1154.796 kb on + strandat 1154.797 kb on - strandat 1154.797 kb on - strandat 1154.797 kb on - strandat 1154.967 kb on + strand, within Ga0059261_1129at 1154.967 kb on + strand, within Ga0059261_1129at 1154.968 kb on - strand, within Ga0059261_1129at 1155.060 kb on + strand, within Ga0059261_1129at 1155.060 kb on + strand, within Ga0059261_1129at 1155.060 kb on + strand, within Ga0059261_1129at 1155.060 kb on + strand, within Ga0059261_1129at 1155.061 kb on - strand, within Ga0059261_1129at 1155.061 kb on - strand, within Ga0059261_1129at 1155.096 kb on + strand, within Ga0059261_1129at 1155.096 kb on + strand, within Ga0059261_1129at 1155.096 kb on + strand, within Ga0059261_1129at 1155.096 kb on + strand, within Ga0059261_1129at 1155.096 kb on + strand, within Ga0059261_1129at 1155.273 kb on + strand, within Ga0059261_1129at 1155.273 kb on + strand, within Ga0059261_1129at 1155.274 kb on - strand, within Ga0059261_1129at 1155.274 kb on - strand, within Ga0059261_1129at 1155.384 kb on + strand, within Ga0059261_1129at 1155.384 kb on + strand, within Ga0059261_1129at 1155.385 kb on - strand, within Ga0059261_1129at 1155.385 kb on - strand, within Ga0059261_1129at 1155.385 kb on - strand, within Ga0059261_1129at 1155.385 kb on - strand, within Ga0059261_1129at 1155.385 kb on - strand, within Ga0059261_1129at 1155.402 kb on + strand, within Ga0059261_1129at 1155.403 kb on - strand, within Ga0059261_1129

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,152,831 + Ga0059261_1127 0.48 +0.2
1,152,831 + Ga0059261_1127 0.48 -0.1
1,152,831 + Ga0059261_1127 0.48 -1.7
1,152,831 + Ga0059261_1127 0.48 +0.5
1,152,831 + Ga0059261_1127 0.48 +0.1
1,152,831 + Ga0059261_1127 0.48 +0.3
1,152,831 + Ga0059261_1127 0.48 -0.1
1,152,831 + Ga0059261_1127 0.48 +0.4
1,152,831 + Ga0059261_1127 0.48 -0.4
1,152,831 + Ga0059261_1127 0.48 +0.5
1,152,832 - Ga0059261_1127 0.49 +1.8
1,152,832 - Ga0059261_1127 0.49 -0.0
1,152,832 - Ga0059261_1127 0.49 -1.6
1,152,832 - Ga0059261_1127 0.49 +0.5
1,152,832 - Ga0059261_1127 0.49 +0.2
1,152,832 - Ga0059261_1127 0.49 +1.2
1,152,837 + Ga0059261_1127 0.49 -0.3
1,152,837 + Ga0059261_1127 0.49 +0.3
1,152,837 + Ga0059261_1127 0.49 -0.4
1,152,837 + Ga0059261_1127 0.49 +0.2
1,152,837 + Ga0059261_1127 0.49 +0.9
1,152,837 + Ga0059261_1127 0.49 -0.4
1,152,837 + Ga0059261_1127 0.49 +0.7
1,152,837 + Ga0059261_1127 0.49 +0.3
1,152,837 + Ga0059261_1127 0.49 +1.8
1,152,837 + Ga0059261_1127 0.49 -0.1
1,152,837 + Ga0059261_1127 0.49 +0.5
1,152,837 + Ga0059261_1127 0.49 +0.8
1,152,837 + Ga0059261_1127 0.49 -0.6
1,152,838 - Ga0059261_1127 0.49 -0.4
1,152,838 - Ga0059261_1127 0.49 +0.5
1,152,838 - Ga0059261_1127 0.49 +0.2
1,152,838 - Ga0059261_1127 0.49 +1.5
1,152,838 - Ga0059261_1127 0.49 +1.2
1,152,838 - Ga0059261_1127 0.49 +0.2
1,152,838 - Ga0059261_1127 0.49 +0.1
1,152,838 - Ga0059261_1127 0.49 -1.1
1,152,940 + Ga0059261_1127 0.56 +0.9
1,152,940 + Ga0059261_1127 0.56 +0.6
1,152,941 - Ga0059261_1127 0.56 -0.0
1,153,037 - Ga0059261_1127 0.63 +0.4
1,153,139 - Ga0059261_1127 0.70 -0.7
1,153,164 + Ga0059261_1127 0.72 +0.8
1,153,164 + Ga0059261_1127 0.72 +0.1
1,153,164 + Ga0059261_1127 0.72 +0.1
1,153,165 - Ga0059261_1127 0.72 +0.4
1,153,165 - Ga0059261_1127 0.72 +0.2
1,153,165 - Ga0059261_1127 0.72 +0.1
1,153,165 - Ga0059261_1127 0.72 -1.0
1,153,165 - Ga0059261_1127 0.72 +0.4
1,153,172 + Ga0059261_1127 0.72 +0.1
1,153,172 + Ga0059261_1127 0.72 -0.1
1,153,173 - Ga0059261_1127 0.72 -1.5
1,153,173 - Ga0059261_1127 0.72 +0.3
1,153,173 - Ga0059261_1127 0.72 +0.8
1,153,194 - Ga0059261_1127 0.74 +0.8
1,153,230 + Ga0059261_1127 0.76 +0.1
1,153,231 - Ga0059261_1127 0.76 -3.4
1,153,231 - Ga0059261_1127 0.76 +0.8
1,153,281 + Ga0059261_1127 0.80 -0.3
1,153,281 + Ga0059261_1127 0.80 +0.1
1,153,281 + Ga0059261_1127 0.80 -0.2
1,153,281 + Ga0059261_1127 0.80 +0.5
1,153,281 + Ga0059261_1127 0.80 -0.1
1,153,281 + Ga0059261_1127 0.80 -0.6
1,153,281 + Ga0059261_1127 0.80 +0.2
1,153,282 - Ga0059261_1127 0.80 -0.3
1,153,597 - -0.0
1,153,597 - -0.4
1,153,598 + +0.1
1,153,598 + +0.2
1,153,598 + +0.5
1,153,598 + +0.4
1,153,599 - -0.7
1,153,599 - -0.5
1,153,599 - -1.6
1,153,848 + Ga0059261_1128 0.13 +0.1
1,153,848 + Ga0059261_1128 0.13 +0.3
1,153,849 - Ga0059261_1128 0.13 -2.2
1,153,849 - Ga0059261_1128 0.13 -0.9
1,153,871 + Ga0059261_1128 0.16 +0.8
1,153,871 + Ga0059261_1128 0.16 +0.4
1,153,871 + Ga0059261_1128 0.16 -0.6
1,153,872 - Ga0059261_1128 0.16 -0.5
1,153,872 - Ga0059261_1128 0.16 +0.1
1,153,872 - Ga0059261_1128 0.16 +0.8
1,153,872 - Ga0059261_1128 0.16 +0.7
1,154,099 + Ga0059261_1128 0.42 +1.3
1,154,099 + Ga0059261_1128 0.42 +0.1
1,154,099 + Ga0059261_1128 0.42 +0.3
1,154,099 + Ga0059261_1128 0.42 +0.2
1,154,100 - Ga0059261_1128 0.42 +1.5
1,154,101 + Ga0059261_1128 0.42 +0.1
1,154,101 + Ga0059261_1128 0.42 +0.7
1,154,101 + Ga0059261_1128 0.42 +0.9
1,154,101 + Ga0059261_1128 0.42 +0.1
1,154,101 + Ga0059261_1128 0.42 +0.9
1,154,101 + Ga0059261_1128 0.42 +0.1
1,154,102 - Ga0059261_1128 0.42 -1.0
1,154,102 - Ga0059261_1128 0.42 +0.3
1,154,140 + Ga0059261_1128 0.46 +0.4
1,154,140 + Ga0059261_1128 0.46 +0.5
1,154,140 + Ga0059261_1128 0.46 +0.0
1,154,140 + Ga0059261_1128 0.46 +0.4
1,154,141 - Ga0059261_1128 0.46 +1.2
1,154,141 - Ga0059261_1128 0.46 +0.1
1,154,141 - -0.9
1,154,141 - Ga0059261_1128 0.46 +0.6
1,154,249 - Ga0059261_1128 0.59 +0.4
1,154,374 + Ga0059261_1128 0.73 +0.3
1,154,374 + Ga0059261_1128 0.73 +0.2
1,154,374 + Ga0059261_1128 0.73 +0.4
1,154,374 + Ga0059261_1128 0.73 -0.2
1,154,374 + Ga0059261_1128 0.73 -0.3
1,154,374 + Ga0059261_1128 0.73 +0.8
1,154,374 + Ga0059261_1128 0.73 +0.4
1,154,375 - Ga0059261_1128 0.73 +0.8
1,154,375 - Ga0059261_1128 0.73 -0.1
1,154,375 - Ga0059261_1128 0.73 -1.1
1,154,375 - Ga0059261_1128 0.73 +0.4
1,154,375 - Ga0059261_1128 0.73 +0.2
1,154,375 - Ga0059261_1128 0.73 +0.0
1,154,375 - Ga0059261_1128 0.73 +0.7
1,154,375 - Ga0059261_1128 0.73 +0.1
1,154,375 - Ga0059261_1128 0.73 +0.5
1,154,375 - Ga0059261_1128 0.73 +1.4
1,154,394 + Ga0059261_1128 0.75 -0.3
1,154,394 + Ga0059261_1128 0.75 +0.7
1,154,394 + Ga0059261_1128 0.75 +0.6
1,154,395 - -1.0
1,154,395 - Ga0059261_1128 0.75 +2.2
1,154,446 + Ga0059261_1128 0.81 +0.0
1,154,446 + Ga0059261_1128 0.81 +0.8
1,154,447 - Ga0059261_1128 0.81 +0.3
1,154,447 - Ga0059261_1128 0.81 +0.5
1,154,447 - Ga0059261_1128 0.81 +0.4
1,154,574 - +0.2
1,154,574 - -0.3
1,154,687 + +0.2
1,154,794 + +0.0
1,154,796 + +0.1
1,154,796 + +0.5
1,154,796 + +1.3
1,154,797 - -0.2
1,154,797 - -0.5
1,154,797 - -0.4
1,154,967 + Ga0059261_1129 0.21 +0.1
1,154,967 + Ga0059261_1129 0.21 -0.2
1,154,968 - Ga0059261_1129 0.21 -0.1
1,155,060 + Ga0059261_1129 0.31 +0.3
1,155,060 + Ga0059261_1129 0.31 +0.2
1,155,060 + Ga0059261_1129 0.31 -0.9
1,155,060 + Ga0059261_1129 0.31 -0.2
1,155,061 - Ga0059261_1129 0.31 -0.4
1,155,061 - Ga0059261_1129 0.31 -0.4
1,155,096 + Ga0059261_1129 0.34 +1.0
1,155,096 + Ga0059261_1129 0.34 +0.0
1,155,096 + Ga0059261_1129 0.34 +1.0
1,155,096 + Ga0059261_1129 0.34 -0.0
1,155,096 + Ga0059261_1129 0.34 -0.6
1,155,273 + Ga0059261_1129 0.52 -0.2
1,155,273 + Ga0059261_1129 0.52 -0.4
1,155,274 - Ga0059261_1129 0.52 -0.2
1,155,274 - Ga0059261_1129 0.52 +0.2
1,155,384 + Ga0059261_1129 0.63 +0.8
1,155,384 + Ga0059261_1129 0.63 -0.1
1,155,385 - Ga0059261_1129 0.64 +0.7
1,155,385 - Ga0059261_1129 0.64 -0.2
1,155,385 - Ga0059261_1129 0.64 -0.0
1,155,385 - Ga0059261_1129 0.64 -0.0
1,155,385 - Ga0059261_1129 0.64 +0.8
1,155,402 + Ga0059261_1129 0.65 +0.0
1,155,403 - Ga0059261_1129 0.65 +0.3

Or see this region's nucleotide sequence