Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18155

Experiment: reconstituted MRS with Sialyllacto-N-tetraose d 5.0 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Sialyllacto-N-tetraose d 5.0 mM
1,858,686	-				-0.1
1,858,691	-				-0.1
1,858,761	-				+0.2
1,858,761	-				+0.6
1,858,761	-				-0.2
1,858,761	-				-0.7
1,858,763	+				+0.1
1,858,763	+				+0.6
1,858,763	+				+0.4
1,858,771	-				+0.5
1,858,771	-				-0.1
1,858,771	-				+0.5
1,858,771	-				-0.9
1,858,818	+				-0.9
1,858,818	+				-0.7
1,858,826	-				-0.1
1,858,826	-				-0.2
1,858,826	-				+1.0
1,858,889	+				-0.7
1,858,895	+				+0.6
1,858,895	+				+0.8
1,858,897	+				+0.3
1,858,900	-				-1.9
1,858,903	-				-0.3
1,858,923	+				+0.6
1,858,937	+				-0.1
1,858,945	-				-0.9
1,858,945	-				+0.2
1,858,946	+				+0.3
1,858,961	+				-0.1
1,858,961	+				-1.3
1,858,969	-				-0.0
1,858,969	-				-0.5
1,858,969	-				+1.6
1,858,990	-		BBR_RS18155	0.10	-0.5
1,859,024	+		BBR_RS18155	0.14	-0.0
1,859,074	-		BBR_RS18155	0.19	-2.1
1,859,074	-		BBR_RS18155	0.19	+0.1
1,859,075	+		BBR_RS18155	0.19	+1.0
1,859,095	-		BBR_RS18155	0.22	-0.1
1,859,111	-		BBR_RS18155	0.23	+0.6
1,859,153	-		BBR_RS18155	0.28	-0.3
1,859,153	-		BBR_RS18155	0.28	-0.3
1,859,158	+		BBR_RS18155	0.29	-0.3
1,859,268	+		BBR_RS18155	0.41	-1.0
1,859,273	+		BBR_RS18155	0.41	-1.3
1,859,292	+		BBR_RS18155	0.43	-0.9
1,859,298	+		BBR_RS18155	0.44	-0.7
1,859,323	+		BBR_RS18155	0.47	+0.3
1,859,337	-		BBR_RS18155	0.48	-0.9
1,859,418	-		BBR_RS18155	0.57	+0.7
1,859,429	+		BBR_RS18155	0.58	+0.1
1,859,432	-		BBR_RS18155	0.59	-0.2
1,859,444	+		BBR_RS18155	0.60	+0.1
1,859,447	-		BBR_RS18155	0.60	-1.2
1,859,452	-		BBR_RS18155	0.61	+0.1
1,859,480	-		BBR_RS18155	0.64	-0.2
1,859,517	+		BBR_RS18155	0.68	+1.0
1,859,517	+		BBR_RS18155	0.68	-0.4
1,859,517	+		BBR_RS18155	0.68	-0.0
1,859,517	+		BBR_RS18155	0.68	-0.1
1,859,525	-		BBR_RS18155	0.69	+0.5
1,859,525	-		BBR_RS18155	0.69	-0.4
1,859,525	-		BBR_RS18155	0.69	+0.4
1,859,535	-		BBR_RS18155	0.70	+0.4
1,859,565	+		BBR_RS18155	0.74	+0.2
1,859,571	+		BBR_RS18155	0.74	-1.1
1,859,571	+		BBR_RS18155	0.74	-0.7
1,859,571	+		BBR_RS18155	0.74	-1.1
1,859,631	+		BBR_RS18155	0.81	-0.1
1,859,682	+		BBR_RS18155	0.86	-0.4
1,859,682	+		BBR_RS18155	0.86	-0.0
1,859,690	-		BBR_RS18155	0.87	-0.5
1,859,690	-		BBR_RS18155	0.87	+0.3
1,859,710	+		BBR_RS18155	0.90	+0.4
1,859,718	-				-0.5
1,859,718	-				-0.1
1,859,720	+				-0.6
1,859,725	+				+0.3
1,859,728	-				-0.2
1,859,733	+				-0.0
1,859,778	+				+0.2
1,859,778	+				-0.4
1,859,778	+				-0.5
1,859,782	-				-0.3
1,859,786	-				-0.3
1,859,812	+				-0.4
1,859,843	+				+0.1
1,859,860	-				-1.2
1,859,865	-				-0.1
1,859,905	+		BBR_RS18160	0.11	+0.4
1,859,912	+		BBR_RS18160	0.13	+0.5
1,859,913	-		BBR_RS18160	0.13	+0.6
1,859,913	-		BBR_RS18160	0.13	+1.1
1,859,962	+		BBR_RS18160	0.22	+0.5
1,859,974	+		BBR_RS18160	0.24	-0.2
1,859,974	+		BBR_RS18160	0.24	+0.5
1,859,974	+		BBR_RS18160	0.24	+0.7
1,859,979	+		BBR_RS18160	0.25	+0.6
1,859,987	-		BBR_RS18160	0.27	+0.4
1,860,010	-		BBR_RS18160	0.31	-1.3
1,860,010	-		BBR_RS18160	0.31	-0.2
1,860,012	+		BBR_RS18160	0.32	+0.3
1,860,014	+		BBR_RS18160	0.32	+0.8
1,860,014	+		BBR_RS18160	0.32	-0.2
1,860,017	-		BBR_RS18160	0.33	-0.3
1,860,022	-		BBR_RS18160	0.34	+0.1
1,860,022	-		BBR_RS18160	0.34	+0.4
1,860,036	+		BBR_RS18160	0.36	-1.1
1,860,118	+		BBR_RS18160	0.52	+1.1
1,860,135	-		BBR_RS18160	0.55	+0.1
1,860,184	+		BBR_RS18160	0.64	+0.3
1,860,200	+		BBR_RS18160	0.67	-0.6
1,860,200	+		BBR_RS18160	0.67	-0.6
1,860,200	+		BBR_RS18160	0.67	-0.2
1,860,200	+		BBR_RS18160	0.67	-0.3
1,860,201	-		BBR_RS18160	0.67	-0.1
1,860,210	+		BBR_RS18160	0.69	-0.3
1,860,215	-		BBR_RS18160	0.70	+0.0
1,860,220	+		BBR_RS18160	0.71	+0.1
1,860,223	-		BBR_RS18160	0.72	-0.7
1,860,228	-		BBR_RS18160	0.73	-0.0
1,860,300	+		BBR_RS18160	0.86	+0.4
1,860,302	-		BBR_RS18160	0.87	+0.2
1,860,324	+				+0.2
1,860,324	+				-0.6
1,860,334	+				-0.5
1,860,439	+				+0.4
1,860,499	-				-0.1
1,860,535	+				+0.3
1,860,584	-				-0.8
1,860,657	-		BBR_RS18165	0.12	-0.9
1,860,657	-		BBR_RS18165	0.12	-0.6
1,860,663	+		BBR_RS18165	0.12	-0.0
1,860,665	-		BBR_RS18165	0.12	+0.2
1,860,671	-		BBR_RS18165	0.13	-0.5
1,860,673	-		BBR_RS18165	0.13	-0.8
1,860,744	-		BBR_RS18165	0.17	+0.4
1,860,756	+		BBR_RS18165	0.18	+1.7
1,860,793	-		BBR_RS18165	0.20	+0.1